Jatropha Genome Database

JcCB0052451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052451.10 + phase: 1 /partial/short
         (46 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g141040.1 HesB/YadR/YfhF chr04_pseudomolecule_IMGAG_V...    95   1e-20

>IMGA|Medtr4g141040.1 HesB/YadR/YfhF chr04_pseudomolecule_IMGAG_V3
           34725581-34723350 E EGN_Mt090430 20090702
          Length = 178

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 45/46 (97%)

Query: 1   CDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 46
           CDPKSLLF+FGMQLDYSDALIGGGF+FKNPNATQTCGCGKSF AEM
Sbjct: 133 CDPKSLLFVFGMQLDYSDALIGGGFNFKNPNATQTCGCGKSFNAEM 178