Jatropha Genome Database

JcCB0050881.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050881.20 + phase: 0 /partial
         (152 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g027010.1 Actin/actin-like chr07_pseudomolecule_IMGAG...   321   1e-88
IMGA|Medtr7g111960.1 Actin/actin-like chr07_pseudomolecule_IMGAG...   319   4e-88
IMGA|Medtr3g144140.1 Actin/actin-like chr03_pseudomolecule_IMGAG...   318   7e-88
IMGA|Medtr7g111960.2 Actin/actin-like chr07_pseudomolecule_IMGAG...   316   3e-87
IMGA|Medtr2g008170.1 Actin/actin-like chr02_pseudomolecule_IMGAG...   314   1e-86
IMGA|Medtr7g027010.2 Actin/actin-like chr07_pseudomolecule_IMGAG...   285   5e-78
IMGA|Medtr3g144140.2 Actin/actin-like chr03_pseudomolecule_IMGAG...   283   2e-77
IMGA|Medtr5g075350.1 Actin/actin-like chr05_pseudomolecule_IMGAG...   117   3e-27
IMGA|Medtr5g075350.3 Actin/actin-like chr05_pseudomolecule_IMGAG...   115   8e-27
IMGA|Medtr5g075350.2 Actin/actin-like chr05_pseudomolecule_IMGAG...   114   2e-26
IMGA|Medtr3g029560.1 Actin/actin-like chr03_pseudomolecule_IMGAG...    83   4e-17

>IMGA|Medtr7g027010.1 Actin/actin-like chr07_pseudomolecule_IMGAG_V3
           7007418-7011883 E EGN_Mt090430 20090702
          Length = 425

 Score =  321 bits (822), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 150/152 (98%), Positives = 151/152 (99%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 49  MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 108

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 109 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 168

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 169 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 200


>IMGA|Medtr7g111960.1 Actin/actin-like chr07_pseudomolecule_IMGAG_V3
           26425230-26423049 E EGN_Mt090430 20090702
          Length = 377

 Score =  319 bits (817), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 152/152 (100%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MA++EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MAESEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152


>IMGA|Medtr3g144140.1 Actin/actin-like chr03_pseudomolecule_IMGAG_V3
           37310058-37313088 E EGN_Mt090430 20090702
          Length = 382

 Score =  318 bits (815), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 150/152 (98%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 6   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 65

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 66  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 125

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTG
Sbjct: 126 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTG 157


>IMGA|Medtr7g111960.2 Actin/actin-like chr07_pseudomolecule_IMGAG_V3
           26425230-26424501 E EGN_Mt090430 20090702
          Length = 157

 Score =  316 bits (809), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 152/152 (100%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MA++EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MAESEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152


>IMGA|Medtr2g008170.1 Actin/actin-like chr02_pseudomolecule_IMGAG_V3
           1442996-1436841 E EGN_Mt090430 20090702
          Length = 377

 Score =  314 bits (804), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 147/152 (96%), Positives = 149/152 (98%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLV DNGTGMVKAGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTG 152


>IMGA|Medtr7g027010.2 Actin/actin-like chr07_pseudomolecule_IMGAG_V3
           7007514-7011883 E EGN_Mt090430 20090702
          Length = 360

 Score =  285 bits (730), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 134/135 (99%), Positives = 135/135 (100%)

Query: 18  MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77
           MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI
Sbjct: 1   MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 60

Query: 78  VNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVA 137
           V+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVA
Sbjct: 61  VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVA 120

Query: 138 IQAVLSLYASGRTTG 152
           IQAVLSLYASGRTTG
Sbjct: 121 IQAVLSLYASGRTTG 135


>IMGA|Medtr3g144140.2 Actin/actin-like chr03_pseudomolecule_IMGAG_V3
           37310058-37313088 E EGN_Mt090430 20090702
          Length = 360

 Score =  283 bits (725), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 133/135 (98%), Positives = 134/135 (99%)

Query: 18  MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77
           MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI
Sbjct: 1   MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 60

Query: 78  VNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVA 137
           V+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVA
Sbjct: 61  VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA 120

Query: 138 IQAVLSLYASGRTTG 152
           IQAVLSLYASGRTTG
Sbjct: 121 IQAVLSLYASGRTTG 135


>IMGA|Medtr5g075350.1 Actin/actin-like chr05_pseudomolecule_IMGAG_V3
           27423732-27444528 E EGN_Mt090430 20090702
          Length = 445

 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 26/177 (14%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQK 52
           M D +++  +V D G+   KAG+AG+DAP+AVFPS+VG      V          G G+ 
Sbjct: 1   MYDGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDESDDAEKNSGSGES 60

Query: 53  DAYV----GDEAQSKR----GILTLKY---------PIEHGIVNNWDDMEKIWHHTFYNE 95
              +    GD+A+ KR    G  +L Y         P++ GIV +WD ++ IW H F  E
Sbjct: 61  KNNIRNVDGDKAKGKRKLYVGSQSLGYRRDFMEVVSPLKDGIVADWDIVDSIWDHAFSRE 120

Query: 96  -LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 151
            L + P+EHP+LL E   N +  RE+  ++MFE +  PA+++A  AVL+ +ASGR T
Sbjct: 121 CLLIDPKEHPMLLAEPSSNAQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRAT 177


>IMGA|Medtr5g075350.3 Actin/actin-like chr05_pseudomolecule_IMGAG_V3
           27430950-27444528 E EGN_Mt090430 20090702
          Length = 444

 Score =  115 bits (288), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 25/176 (14%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQK 52
           M   +++  +V D G+   KAG+AG+DAP+AVFPS+VG      V          G G+ 
Sbjct: 1   MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDESDDAEKNSGSGES 60

Query: 53  DAYV----GDEAQSKR----GILTLKY---------PIEHGIVNNWDDMEKIWHHTFYNE 95
              +    GD+A+ KR    G  +L Y         P++ GIV +WD ++ IW H F   
Sbjct: 61  KNNIRNVDGDKAKGKRKLYVGSQSLGYRRDFMEVVSPLKDGIVADWDIVDSIWDHAFREC 120

Query: 96  LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 151
           L + P+EHP+LL E   N +  RE+  ++MFE +  PA+++A  AVL+ +ASGR T
Sbjct: 121 LLIDPKEHPMLLAEPSSNAQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRAT 176


>IMGA|Medtr5g075350.2 Actin/actin-like chr05_pseudomolecule_IMGAG_V3
           27430840-27444528 E EGN_Mt090430 20090702
          Length = 445

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 98/177 (55%), Gaps = 26/177 (14%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQK 52
           M   +++  +V D G+   KAG+AG+DAP+AVFPS+VG      V          G G+ 
Sbjct: 1   MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDESDDAEKNSGSGES 60

Query: 53  DAYV----GDEAQSKR----GILTLKY---------PIEHGIVNNWDDMEKIWHHTFYNE 95
              +    GD+A+ KR    G  +L Y         P++ GIV +WD ++ IW H F  E
Sbjct: 61  KNNIRNVDGDKAKGKRKLYVGSQSLGYRRDFMEVVSPLKDGIVADWDIVDSIWDHAFSRE 120

Query: 96  -LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 151
            L + P+EHP+LL E   N +  RE+  ++MFE +  PA+++A  AVL+ +ASGR T
Sbjct: 121 CLLIDPKEHPMLLAEPSSNAQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRAT 177


>IMGA|Medtr3g029560.1 Actin/actin-like chr03_pseudomolecule_IMGAG_V3
           7797409-7790426 E EGN_Mt090430 20090702
          Length = 363

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 13/148 (8%)

Query: 7   IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG 65
           ++  V D G+ ++KAGFA  D  P  + PS + R        G GQ    V D+   +  
Sbjct: 1   MEAAVIDAGSSLLKAGFAIPDQTPAMIIPSQMKRMVDETNDNGNGQ---LVVDDVAVE-- 55

Query: 66  ILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQI 124
                 P+  G V +WD ME + ++  Y+ L      E  +L T+    PKAN+E++ Q+
Sbjct: 56  ------PVVRGYVRDWDAMEDLLNYVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQL 109

Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MFETFN    Y + QAVLSLYA GR +G
Sbjct: 110 MFETFNISGFYASEQAVLSLYAVGRISG 137