Jatropha Genome Database

JcCB0050881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050881.10 + phase: 0 /pseudo/partial
         (277 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g094710.1 3-oxo-5-alpha-steroid 4-dehydrogenase, C-te...   426   e-120
IMGA|Medtr6g041190.1 3-oxo-5-alpha-steroid 4-dehydrogenase, C-te...    73   2e-13

>IMGA|Medtr5g094710.1 3-oxo-5-alpha-steroid 4-dehydrogenase,
           C-terminal chr05_pseudomolecule_IMGAG_V3
           37494913-37491130 E EGN_Mt090430 20090702
          Length = 310

 Score =  426 bits (1094), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/250 (82%), Positives = 218/250 (87%), Gaps = 3/250 (1%)

Query: 31  LNYKKSLKDYCDGNS--LTVVLKDLGPQVSYRTLFFWEYLGXXXXXXXXXXXXXX-QYFG 87
           LNYKKSL DY  GNS  LTV  KDLGPQVSYRTLFF+EYLG               QYFG
Sbjct: 61  LNYKKSLNDYTSGNSKTLTVTFKDLGPQVSYRTLFFFEYLGPLLLYPVFYYFPVVYQYFG 120

Query: 88  YKGERVIQPVQTYALLYWCFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFGCYIA 147
           YKGE VI PVQTYA+ YWCFHY KRI+ETFFVHRFSHATSPLSNVFRNCAYYWTFGCYIA
Sbjct: 121 YKGEHVIHPVQTYAMYYWCFHYAKRILETFFVHRFSHATSPLSNVFRNCAYYWTFGCYIA 180

Query: 148 YYVNHPLYTPVSDLQWKIGFGFGLICQVANFYCHILLKNLRSPDGGGGYQIPRGFLFDIV 207
           YYVNHPLYTPVSDLQ KIGFGFG++CQV+NFYCHI+L+NLR P G GGYQIPRGFLF+IV
Sbjct: 181 YYVNHPLYTPVSDLQMKIGFGFGILCQVSNFYCHIILRNLRGPAGEGGYQIPRGFLFNIV 240

Query: 208 TCANYTTEIYQWLGFNIATQTVAGYIFLVVAAMIMTNWALAKHRRLKKLFDGKDGRPKYP 267
           TCANYTTEIYQWLGFNIATQT+AGYIFL VAA IMTNWALAKHRRLKKLFDGK+GRP+YP
Sbjct: 241 TCANYTTEIYQWLGFNIATQTIAGYIFLAVAAFIMTNWALAKHRRLKKLFDGKEGRPRYP 300

Query: 268 RRWVILPPFL 277
           RRWVILPPFL
Sbjct: 301 RRWVILPPFL 310


>IMGA|Medtr6g041190.1 3-oxo-5-alpha-steroid 4-dehydrogenase,
           C-terminal chr06_pseudomolecule_IMGAG_V3 8788138-8785735
           F EGN_Mt090430 20090702
          Length = 270

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 106 CFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFGCYI-AYYVNHPLYTPVSDLQWK 164
            FH+FKR+ E  FVH++S + +  + +    +Y+ +    I A ++   L  P  DL + 
Sbjct: 105 TFHFFKRVFEVLFVHKYSGSMALETAIPITLSYFLSSATLIYAQHLTSNLPEPSIDLLYP 164

Query: 165 IGFGFGLICQVANFYCHILLKNLRSPDGGGGYQIPRGFLFDIVTCANYTTEIYQWLGFNI 224
            G    L+    NFY H LL  LR   G   Y+IP+G LFD V C +Y  EI  + GF+ 
Sbjct: 165 -GIALFLVGVTGNFYHHYLLSKLRG-KGEKEYKIPKGGLFDFVICPHYLFEIIGFYGFSF 222

Query: 225 ATQTVAGYIFLV 236
            +QT+  + F +
Sbjct: 223 ISQTLYSFSFAI 234