Jatropha Genome Database
- JcCB0050421.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0050421.20 + phase: 1 /TE
(1716 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 379 e-105
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 333 6e-91
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 306 7e-83
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 286 8e-77
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 252 9e-67
IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri... 241 2e-63
IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H... 207 2e-53
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 194 5e-49
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 174 3e-43
IMGA|Medtr2g080870.1 Peptidase aspartic, catalytic chr02_pseudom... 157 5e-38
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 134 4e-31
IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 129 2e-29
IMGA|Medtr5g105390.1 Polynucleotidyl transferase, Ribonuclease H... 128 3e-29
IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fo... 121 3e-27
IMGA|Medtr6g028320.1 Polynucleotidyl transferase, Ribonuclease H... 117 7e-26
IMGA|Medtr3g068370.1 Polynucleotidyl transferase, Ribonuclease H... 112 1e-24
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 104 3e-22
IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse transc... 103 7e-22
IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse transc... 100 1e-20
IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H... 99 1e-20
IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse transc... 99 2e-20
IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87... 97 1e-19
IMGA|Medtr3g061900.1 Polynucleotidyl transferase, Ribonuclease H... 96 1e-19
IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical, ch... 92 3e-18
IMGA|AC137826_25.1 Putative retroelement pol polyprotein, AC1378... 89 2e-17
IMGA|Medtr4g073750.1 Polynucleotidyl transferase, Ribonuclease H... 88 3e-17
IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 88 5e-17
IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse transcrip... 81 4e-15
IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H... 79 3e-14
IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein, chr0... 77 9e-14
IMGA|Medtr1g065530.1 pol, putative chr01_pseudomolecule_IMGAG_V3... 76 2e-13
IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61 17375... 74 5e-13
IMGA|Medtr7g040300.1 Retrotransposon gag protein chr07_pseudomol... 72 2e-12
IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 ... 70 8e-12
IMGA|Medtr7g008350.1 hypothetical protein chr07_pseudomolecule_I... 69 3e-11
IMGA|Medtr5g062240.1 Enzymatic polyprotein, related chr05_pseudo... 67 1e-10
IMGA|Medtr4g073740.1 polyprotein, putative chr04_pseudomolecule_... 64 6e-10
IMGA|Medtr6g077290.1 Ribonuclease H, putative chr06_pseudomolecu... 64 9e-10
IMGA|Medtr6g043530.1 Retrotransposon gag protein chr06_pseudomol... 63 1e-09
IMGA|Medtr5g028970.1 hypothetical protein chr05_pseudomolecule_I... 62 2e-09
IMGA|AC233675_16.1 Retrotransposon gag protein AC233675.1 78601-... 58 4e-08
IMGA|Medtr4g109300.1 Retrotransposon gag protein chr04_pseudomol... 58 4e-08
IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse transcrip... 57 7e-08
IMGA|Medtr7g040530.1 hypothetical protein chr07_pseudomolecule_I... 56 2e-07
IMGA|Medtr5g065540.1 hypothetical protein chr05_pseudomolecule_I... 55 4e-07
IMGA|Medtr2g077960.1 hypothetical protein chr02_pseudomolecule_I... 54 6e-07
IMGA|Medtr4g047410.1 gag-pol polyprotein, putative chr04_pseudom... 53 1e-06
IMGA|Medtr4g047200.1 gag-pol polyprotein, putative chr04_pseudom... 53 1e-06
IMGA|Medtr4g155320.1 hypothetical protein chr04_pseudomolecule_I... 53 1e-06
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 52 2e-06
IMGA|Medtr1g037440.1 hypothetical protein chr01_pseudomolecule_I... 52 2e-06
IMGA|Medtr2g116920.1 Enzymatic polyprotein, putative chr02_pseud... 52 3e-06
IMGA|AC137826_3.1 Polynucleotidyl transferase, Ribonuclease H fo... 51 5e-06
IMGA|Medtr5g039360.1 hypothetical protein chr05_pseudomolecule_I... 51 6e-06
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 50 8e-06
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
9673679-9667953 H EGN_Mt090430 20090702
Length = 1435
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 266/869 (30%), Positives = 424/869 (48%), Gaps = 81/869 (9%)
Query: 813 HKILMEEDYKPSIEHQRRLNPNMKEVVKAEIIKLLDAGIIYPISDSNWVSPVQVVPKKGG 872
H I + D P R + K ++ ++++L GII P S V +V KK G
Sbjct: 574 HAIPLLTDSNPVKVKPYRYAHSQKTQIEKMVLEMLQQGIIQPSSSPFSSP-VLLVKKKDG 632
Query: 873 MTAISNENNELIPTRTVTGWRVCIDYRKLNKATRKDHFPLPFIDQMLERLAGYPFYCFLD 932
WR C DYR LN T KD FP+P +D++L+ L G ++ LD
Sbjct: 633 ------------------SWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAAYFSKLD 674
Query: 933 GYSGYFQIPIAPEDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDMVEKFIE 992
SGY QI + ED+ KT F G + + MPFGL NAPA+FQ M +F +++ + +
Sbjct: 675 LLSGYHQILVKSEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQNLMNKVFCNLLRRSVL 734
Query: 993 VFMDDFSVFGSSFDACLHNLSLVMQRCEDTNLVLNWEKCHFMVSEGIVLGHKISQKGIEV 1052
VF DD V+ ++ A L +L V+Q + +L KC F +++ LGH +S +G+ +
Sbjct: 735 VFFDDILVYSPTWHAHLAHLEEVLQLLQTHSLFAKISKCCFGMTQIDYLGHTVSGQGVAM 794
Query: 1053 DKAKIEVIEKLPPPNTVKGIRSFLGHAGFYRRFIKDFSKITKPLCNLLVKDAPFDFDKEC 1112
D +K++ + P P +K +R FLG G+YRRFI+ ++ + PL +LL KD+ F + +
Sbjct: 795 DCSKVKAVLDWPTPTNLKQLRGFLGLTGYYRRFIQGYAAVASPLTDLLKKDS-FKWTENA 853
Query: 1113 LDAFNRLKKELISAPIITTPDWTLPFELMCDASDHAVGAVLGQRKDKKLHVIYYASRTLN 1172
AF RLK+ L AP+++ PD++ F L DAS +GAVL Q K H I + S+ L+
Sbjct: 854 QLAFERLKQSLTKAPVLSLPDFSKSFVLETDASGFGIGAVLSQGK----HPIAFFSKKLS 909
Query: 1173 DAQLNYATTEKELLAIVFAFDKFRAYLIGAKTIVYTDHSAIKYLLEKKDAKPRLIRWVLL 1232
+ +EL AI A KFR YLIG + I+ TD ++K L ++ P W+
Sbjct: 910 PRMQKQSAYVRELYAISEAISKFRHYLIGHQFIIRTDQKSLKSLTDQAIQTPEQQNWLHK 969
Query: 1233 LQEFDLEIRDKKGTENLVADHLSRLELGEEDTSELQINESFPH-EQLLLVANAQTPWYAD 1291
++ I K G +N+ AD LSR L L I+ P Q + +A + Y
Sbjct: 970 FLGYNFTIEYKPGKDNIAADALSRSLL-------LAISSPQPALTQQIQIAGKEDSLYTS 1022
Query: 1292 IVNYLVCKISPPNFSYQQRKKFFHDIKFYYWEEPFLFKYCSDQLFRRCIPETE--IESVL 1349
++ + + P N+S R H W++ R IPE I S+L
Sbjct: 1023 LITHCLQNTGPENYSI--RNGLLH------WKD------------RLVIPEVPELIHSIL 1062
Query: 1350 KFCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEMPLN 1409
+ HS GG+ G ++T ARI + +WPNL KD F+ C CQ+ ++ L
Sbjct: 1063 QEFHSSPLGGHSGITRTKARI-SAQFFWPNLHKDVTLFISTCLVCQQ-AKVATTLPAGLL 1120
Query: 1410 SILEV--EIFDIWGLDFMGPFPPSYSNQYILVAVDYVSKWAEAVALPNN-DAKSVMSFIK 1466
L + +I++ +DF+ PPS+ + V +D +SK+ L ++ + SV
Sbjct: 1121 QPLSIPSQIWEDVAMDFVTGLPPSHGYTVLFVVIDRLSKYCHLTPLKSDYSSLSVAQAFL 1180
Query: 1467 KNIFTRHGTPRAIITDGGKHFCNKYLDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKK 1526
++ HG PR+I++D K F +K+ L G T + + YHPQ+ GQ E N+ I+
Sbjct: 1181 HSVVKLHGFPRSIVSDRDKVFLSKFWQHLFKLSGTTLNMSSAYHPQSDGQSEALNKCIEL 1240
Query: 1527 ILETTVGQSRKDWSKKLDDALWAYRTAFKTPIGMSPYRMVYGKACHLPVELEHKAF--WA 1584
L + K W L A + Y T+ + IGM+P+R VYG+ V+ E ++ A
Sbjct: 1241 YLRCFTADNPKSWFTLLPWAEFWYNTSHHSSIGMTPFRAVYGRDPPQVVKYEIQSADPPA 1300
Query: 1585 IQFLNFNTKEVGQKXLLQLNMMDEMSLHAYESAKIYKDRTKQWHDKRIIMRDLKVGQQVL 1644
+Q L + +++ ++ ++ H ++ I K++ D++ + + +VG QVL
Sbjct: 1301 LQDL-LSERDI---------VLTQLKAHLAKAQNI----MKKYADQKRRLLEFEVGDQVL 1346
Query: 1645 LYNSRLRLFPGKLRS------RWSGPFTI 1667
+ R LR R+ GPF +
Sbjct: 1347 VKLQPYRQASVALRKNQKLGLRYFGPFEV 1375
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 333 bits (853), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 256/876 (29%), Positives = 403/876 (46%), Gaps = 91/876 (10%)
Query: 834 NMKEVVKAEIIKLLDAGIIYPISDSNWVSPVQVVPKKGGMTAISNENNELIPTRTVTGWR 893
+ KE + I +L GII P S S + SPV +V KK G WR
Sbjct: 583 SQKEAMTTIIHDMLHDGIIVP-STSPYSSPVLLVRKKDG------------------SWR 623
Query: 894 VCIDYRKLNKATRKDHFPLPFIDQMLERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFT 953
C+DYR LN T D FP+P ID++ + L + D SGY QI + PED KTTF
Sbjct: 624 FCVDYRALNAVTICDRFPIPTIDELFDELGSASLFSKTDLRSGYHQIRVVPEDTHKTTFR 683
Query: 954 CPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLS 1013
G + + MPFGL NAP+TFQ M +D + ++ S D L +L
Sbjct: 684 TFDGHYEFLVMPFGLSNAPSTFQSAM----NDFLRPYLR---------RRSLDDHLIHLR 730
Query: 1014 LVMQRCEDTNLVLNWEKCHFMVSEGIVLGHKISQKGIEVDKAKIEVIEKLPPPNTVKGIR 1073
L++ + V KC F V LGH IS KG++ D+ KI+ I P P ++ +R
Sbjct: 731 LILDLLASHHFVAKMSKCVFAVDTIDYLGHIISHKGVQPDEDKIQAILSWPTPRSLTTLR 790
Query: 1074 SFLGHAGFYRRFIKDFSKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPD 1133
FLG FYRRF++ ++ + PL +LL + F + AF++LK+++ + P++ P+
Sbjct: 791 GFLGLISFYRRFVRHYATLAAPLTDLL-RSTKFTLNATAEAAFSKLKEQITTTPVLILPN 849
Query: 1134 WTLPFELMCDASDHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFD 1193
++ F + DAS A+GAVL Q + +++ + N Q + + +E+ AI A
Sbjct: 850 FSKLFVVETDASAVAIGAVLSQEGPP---LAFFSKKMCNRMQ-SSSVYVREMYAITEAIK 905
Query: 1194 KFRAYLIGAKTIVYTDHSAIKYLLEKKDAKPRLIRWVLLLQEFDLEIRDKKGTENLVADH 1253
K+ YLIG +YTD ++K LL + P +WV LQ F+ E K G N VAD
Sbjct: 906 KWHQYLIGRHFHIYTDQKSLKNLLVQTIQTPEQQKWVSKLQGFNFEFFYKPGKANQVADA 965
Query: 1254 LSRLELGEEDTSELQINESFPHEQLLLVANAQTPWYADIVNYLVCKISPPNFSYQQRKKF 1313
LSR EE T L ++ P +L+ + + D + QQ K+
Sbjct: 966 LSR-RTSEESTLILAVSSPIP----VLLQQLRDFYTTDPTGQQLL---------QQHKE- 1010
Query: 1314 FHDIKFYYWEEPFLFKYCSDQLFRRCIPETEIESVLKFCHSMECGGYFGASKTAARILES 1373
+Q FR + + +L HS GY G T ARI +
Sbjct: 1011 ---------------SQNENQNFRTPLRDV----MLTEYHSTPSSGYSGVQPTLARI-SA 1050
Query: 1374 GLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEMPLNSI-LEVEIFDIWGLDFMGPFPPSY 1432
WP ++ D +FVR C CQ+ I+ + + L+ + + ++ + +DF+ P S+
Sbjct: 1051 SFSWPGIYADVKSFVRTCQVCQQNKYITTKKQGLLHPLDIPEKVREDLSMDFVTHLPNSF 1110
Query: 1433 SNQYILVAVDYVSKWAEAVALPNN-DAKSVMSFIKKNIFTRHGTPRAIITDGGKHFCNKY 1491
+ I V D ++K+A +AL A + S I+ HG P++I++D F + +
Sbjct: 1111 GHTTIWVVCDRLTKFAHFIALSAKFTAPDLASRFSVEIYRLHGIPKSIVSDRDTLFVSAF 1170
Query: 1492 LDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKKILETTVGQSRKDWSKKLDDALWAYR 1551
L G T R T YHP+T GQ EV NR ++ L + K W K L A Y
Sbjct: 1171 WKELFKIQGTTLRFSTAYHPETDGQTEVVNRSLETYLRCFTSEHPKQWYKYLHLAELWYN 1230
Query: 1552 TAFKTPIGMSPYRMVYGKACHLPVELEHKAFWAIQFLNFNTKEVGQKXL---LQLNMMDE 1608
++F + I M+P+ +YG+ P + L+ + ++ + L+ N+
Sbjct: 1231 SSFHSAIRMTPFEALYGRP---PPRMTDYISGRSSLLSVDQILTHRQAIITNLKHNLHIS 1287
Query: 1609 MSLHAYESAKIYKDRTKQWHDKRIIMRDLKVGQQVLLYNSRLRLFPGKLRSRWSGPFTIK 1668
A+++ K D Q D +++ L+ +Q + + + KL R+ GPFT+
Sbjct: 1288 KQRMAFQANKHRIDCAFQEGD--LVLLKLQPYRQTTVQHRVSQ----KLAKRFFGPFTVH 1341
Query: 1669 EIFPHGAIEI---VDGKSNRSFKVNAQRLRSYHSEN 1701
A E+ D K + F V+ +LR+YH +
Sbjct: 1342 RRIGSMAYELRLPPDSKIHPVFHVS--QLRAYHGRD 1375
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcriptase)
AC234026.1 2154-4412 H EGN_Mt090430 20090702
Length = 705
Score = 306 bits (783), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 198/559 (35%), Positives = 286/559 (51%), Gaps = 43/559 (7%)
Query: 834 NMKEVVKAEIIKLLDAGIIYPISDSNWVSPVQVVPKKGGMTAISNENNELIPTRTVTGWR 893
+ KE ++ ++ +LL AG+I P S S + SPV +V KK WR
Sbjct: 163 HQKEEIEKQVAELLAAGVIRP-SMSAYSSPVILVKKKD------------------KSWR 203
Query: 894 VCIDYRKLNKATRKDHFPLPFIDQMLERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFT 953
+C+DYR LNKA D +P+P +D++L+ L G + +D SGY QI + D KT F
Sbjct: 204 MCVDYRALNKARIPDKYPIPVVDELLDELYGATIFSKIDLKSGYHQIRVHENDIHKTAFR 263
Query: 954 CPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLS 1013
G + Y MPFGL NAPATFQ M IF + KF+ VF DD ++ +L+
Sbjct: 264 THNGHYEYLVMPFGLMNAPATFQSTMNDIFRPFLRKFVLVFFDDILIYSKDLAEHQSHLN 323
Query: 1014 LVMQRCEDTNLVLNWEKCHFMVSEGIVLGHKISQKGIEVDKAKIEVIEKLPPPNTVKGIR 1073
V+ V N KC F E LGH IS KG+ VD KI I + P P VKG+R
Sbjct: 324 QVLTILFSNCFVANLSKCKFGCVEVDYLGHVISGKGVAVDPEKIRCILEWPEPKNVKGVR 383
Query: 1074 SFLGHAGFYRRFIKDFSKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPD 1133
FLG G+YR+F+KD+ KI KPL L KD F + +AFNRLK + S ++ P+
Sbjct: 384 GFLGLTGYYRKFVKDYGKIAKPLTELTKKDG-FSWSPTAAEAFNRLKHIMTSPLVLVLPN 442
Query: 1134 WTLPFELMCDASDHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFD 1193
++LPFE+ CDA+ +GAVL Q K + Y S+ L+ L+ + EKEL+A+V
Sbjct: 443 FSLPFEIECDAAGRGIGAVLMQNKQP----VAYFSKALSAGNLSKSVYEKELMALVLCIQ 498
Query: 1194 KFRAYLIGAKTIVYTDHSAIKYLLEKKDAKPRLIRWVLLLQEFDLEIRDKKGTENLVADH 1253
+R YL+G V+TDH ++K+ L+++ P W+ L + E++ K G EN AD
Sbjct: 499 HWRHYLLGKAFTVHTDHKSLKHFLQQRVTSPDQQCWLAKLLGYQFEVKYKPGLENKAADA 558
Query: 1254 LSRLELGEEDTSELQINESFPHEQLLLVANAQTPWYADIVNYLVCKISPPNFSYQQRKKF 1313
LSR G+ D L ++ + LL A+ P DI ++ QQ K
Sbjct: 559 LSRCH-GDVDLKSLISYPTWLGGKQLLEEVAKDP---DIQKIMI------EVQNQQEIKA 608
Query: 1314 FHDIKFYYWEEPFLFKYCSDQLFRRCIPETEIESVLKFCHSMECGGYFGASKTAARILES 1373
+++K + LF Y + P I +L+ HS GG+ G +T R+ E+
Sbjct: 609 GYEVK-----QGVLF-YQGRLVISPTSP--SIPLLLEEFHSTPSGGHSGFLRTYRRLAEN 660
Query: 1374 GLYWPNLFKDAYNFVRLCD 1392
+YW + K +FVR C+
Sbjct: 661 -IYWIGMQKRVRDFVRACE 678
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 286 bits (731), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 158/433 (36%), Positives = 239/433 (55%), Gaps = 27/433 (6%)
Query: 852 IYPISDSNWVSPVQVVPKKGGMTAISNENNELIPTRTVTGWRVCIDYRKLNKATRKDHFP 911
+ P SDS V+ + VPKK G R+ +D+R LNKA+ KD+FP
Sbjct: 134 VAPSSDS--VANIVPVPKKDGKV------------------RMSVDFRDLNKASPKDNFP 173
Query: 912 LPFIDQMLERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFTCPYGTFAYRRMPFGLCNA 971
LP ID +++ A + F+DG+SGY QI ++PED+EKT+F P+GTF Y+ MPFGL NA
Sbjct: 174 LPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINA 233
Query: 972 PATFQRCMMSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLSLVMQRCEDTNLVLNWEKC 1031
AT+QR M ++F DM+ K +EV++DD V + + + L+ + +R L LN KC
Sbjct: 234 GATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKC 293
Query: 1032 HFMVSEGIVLGHKISQKGIEVDKAKIEVIEKLPPPNTVKGIRSFLGHAGFYRRFIKDFSK 1091
F V G +LG +SQKGIEVD K+ I ++P P T K +R FLG + RFI +
Sbjct: 294 TFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTA 353
Query: 1092 ITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWTLPFELMCDASDHAVGA 1151
P+ LL K+ P ++ EC +AF+ +K L+ PI+ P P + D ++G
Sbjct: 354 TCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGC 413
Query: 1152 VLGQRKD--KKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDKFRAYLIGAKTIVYTD 1209
VLGQ+ + KK H IYY S+ D + Y EK A+ +A + R YL+ T + +
Sbjct: 414 VLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISR 473
Query: 1210 HSAIKYLLEKKDAKPRLIRWVLLLQEFDLEIRDKKGTE-NLVADHLSRLELGEEDTSELQ 1268
IKY+ EK ++ RW +LL E+ + + +K + +++ADHL+ L + E
Sbjct: 474 MDPIKYIFEKAAVTGKIARWQMLLSEYYIVFKTQKAIKGSILADHLAYQPLDDYQPIEF- 532
Query: 1269 INESFPHEQLLLV 1281
FP E+++ +
Sbjct: 533 ---DFPDEEIMYL 542
Score = 221 bits (562), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 175/607 (28%), Positives = 273/607 (44%), Gaps = 58/607 (9%)
Query: 1106 FDF-DKECLDAFNRLKKELISAPII-TTPD----WTLPFELMCDASDHAVGAVLGQRKDK 1159
FDF D+E + LK + P+I PD W L F+ +A +GAV+ +
Sbjct: 532 FDFPDEEIM----YLKSKDCEEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQG- 586
Query: 1160 KLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDKFRAYL--IGAKTIV-------YTDH 1210
H I + +R L + N A E + I A D +L G +V + H
Sbjct: 587 --HHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETH 644
Query: 1211 SAIKYLLEKKDAKPRLIRWVLLLQEFDLEIRDKKGTENLVADHLSRLEL-----GEEDTS 1265
A L+ +D RL+ + +E+ EN +AD L+ L D
Sbjct: 645 HA--KLIPYRDYARRLLTYFT-----KVELHHIPRDENQMADALATLSSMFRVNHWNDVP 697
Query: 1266 ELQINESFPHEQLLLVANA----------QTPWYADIVNYLVCKISPPNFSYQQRKKFFH 1315
+++ + + + PWY DI +L+ + P S Q +K
Sbjct: 698 LIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYPSGASKQDKKTLRR 757
Query: 1316 DIKFYYWEEPFLFKYCSDQLFRRCIPETEIESVLKFCHSMECGGYFGASKTAARILESGL 1375
+ L+K D + RC+ E E E ++ H G + + ++L +G
Sbjct: 758 LASRFLLNGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGY 817
Query: 1376 YWPNLFKDAYNFVRLCDRCQRLGNISKRHEMP--LNSILEVEIFDIWGLDFMGPFPPSYS 1433
YW + D Y + R C +CQ + K H P LN I F +WG+D +G P S
Sbjct: 818 YWMAMEHDCYQYARKCHKCQIYAD--KIHVPPHALNVISSPWPFSMWGIDMIGRIEPKAS 875
Query: 1434 N--QYILVAVDYVSKWAEAVALPNNDAKSVMSFIKKNIFTRHGTPRAIITDGGKHFCNKY 1491
N ++ILVA+DY +KW EA + N + V FIK NI R+G P IITD G + N
Sbjct: 876 NGHRFILVAIDYFTKWVEAASYANVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNV 935
Query: 1492 LDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKKILETTVGQSRKDWSKKLDDALWAYR 1551
+ +L ++ + H +PY PQ +G VE N+ IK+I++ V + KDW + L AL YR
Sbjct: 936 VQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMV-TTYKDWHEMLPYALHGYR 994
Query: 1552 TAFKTPIGMSPYRMVYGKACHLPVELEHKAFWAIQFLNFNTKEVGQKXLLQLNMMDEMSL 1611
T ++ G +P+ +VYG LP+E+E + I + E Q QLN+++E +
Sbjct: 995 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRM 1054
Query: 1612 HAYESAKIYKDRTKQWHDKRIIMRDLKVGQQVLLYNSRLRLFPGKLRSRWS----GPFTI 1667
A + Y+ R K DK++ R+ KVG+ VL R+ P R +W+ GP+ +
Sbjct: 1055 DAMARGQSYQARMKTAFDKKVHPREFKVGELVL--KRRVSQQPDP-RDKWTPNYEGPYVV 1111
Query: 1668 KEIFPHG 1674
K+ F G
Sbjct: 1112 KKAFSGG 1118
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 252 bits (644), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 213/380 (56%), Gaps = 21/380 (5%)
Query: 879 ENNELIPTRTVTGWRVCIDYRKLNKATRKDHFPLPFIDQMLERLAGYPFYCFLDGYSGYF 938
++ L+ + V WR C+DYR LN KD FPLP ID++L+ L ++ LD G+
Sbjct: 15 SSHVLLVKKKVGSWRCCVDYRALNAI--KDRFPLPTIDELLDDLGKASWFSKLDLQQGFH 72
Query: 939 QIPIAPEDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDMVEKFIEVFMDDF 998
QI +APED KT F +G + + MPFGLCNAP+TF+ M ++F + KF
Sbjct: 73 QIRMAPEDIPKTAFRTHHGHYECKVMPFGLCNAPSTFKSTMNNLFQPFLRKF-------- 124
Query: 999 SVFGSSFDACLHNLSLVMQRCEDTNLVLNWEKCHFMVSEGIVLGHKISQKGIEVDKAKIE 1058
+ D H L L++ + + L KC F + LGH ISQKGI+ D +K++
Sbjct: 125 -----AADHLTH-LQLILTKLLEAQFFLKQSKCLFGQRQLEYLGHIISQKGIQADPSKLQ 178
Query: 1059 VIEKLPPPNTVKGIRSFLGHAGFYRRFIKDFSKITKPLCNLLVKDAPFDFDKECLDAFNR 1118
+ + P P + +R FLG GFYR+FIK ++ I PL NLL KD+ F + E +F
Sbjct: 179 AMVEWPQPTSTTLLRRFLGLTGFYRKFIKGYASIAAPLTNLLKKDS-FIWSPEAEHSFQT 237
Query: 1119 LKKELISAPIITTPDWTLPFELMCDASDHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNY 1178
LKK + AP + PD+TLPF+L DAS A+GAVL Q+ H I + S+ L L
Sbjct: 238 LKKAMTEAPTLAVPDFTLPFDLETDASAKAMGAVLMQQN----HPIAFFSKQLCQRLLRS 293
Query: 1179 ATTEKELLAIVFAFDKFRAYLIGAKTIVYTDHSAIKYLLEKKDAKPRLIRWVLLLQEFDL 1238
+T +EL AI A K+R YL+G ++TDH ++K L+ + P ++ L +D+
Sbjct: 294 STYVRELHAITTAVKKWRQYLLGHPFTIHTDHKSLKELISQVIQTPEQQVYLSKLLGYDV 353
Query: 1239 EIRDKKGTENLVADHLSRLE 1258
+I+ K G N+VAD LSR++
Sbjct: 354 KIQFKSGKTNVVADALSRID 373
>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase, Ribonuclease
H fold AC229695.5 96798-94993 H EGN_Mt090430 20090702
Length = 555
Score = 241 bits (615), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 171/600 (28%), Positives = 290/600 (48%), Gaps = 73/600 (12%)
Query: 979 MMSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLSLVMQRCEDTNLVLNWEKCHFMVSEG 1038
M + + KF VF DD V+ + H+L V+ ++ LV N++KC F +
Sbjct: 1 MNEVLRPYLRKFALVFFDDILVYSKDVEHHKHHLGAVLALLKEHQLVANYKKCTFGQHQL 60
Query: 1039 IVLGHKISQKGIEVDKAKIEVIEKLPPPNTVKGIRSFLGHAGFYRRFIKDFSKITKPLCN 1098
LGH IS +G+ D+ K++V+ P P +K +R FLG G+YRRF++++ I KPL +
Sbjct: 61 EYLGHIISAQGVAADQKKVDVMLTWPRPKDLKSLRGFLGLTGYYRRFVRNYGSIAKPLTH 120
Query: 1099 LLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWTLPFELMCDASDHAVGAVLGQRKD 1158
LL KD F +++E +F+ LKK + PI++ P++++PF + DAS+ +GA+L Q+
Sbjct: 121 LLKKDN-FLWNEEAQLSFDTLKKAMAELPILSVPNFSIPFVIETDASNTGLGAILMQQGR 179
Query: 1159 KKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDKFRAYLIGAKTIVYTDHSAIKYLLE 1218
+ + S+ L++ + E+EL+AIVFA K+R YL+G I++TD ++K+L +
Sbjct: 180 P----VAFLSQPLSERAQRKSIYERELMAIVFAVQKWRHYLMGNHFIIHTDQKSLKFLQD 235
Query: 1219 KKDAKPRLIRWVLLLQEFDLEIRDKKGTENLVADHLSRLELGEEDTSELQINESFPHEQL 1278
++ +W L FD EI K G++N AD LSR + S + + E
Sbjct: 236 QRVLGADQFKWTSKLMGFDFEIIYKPGSDNRAADALSR-RMTYAAISMIHFADYEEWEAE 294
Query: 1279 LLVANAQTPWYADIVNYLVCKISPPNFSYQQRKKFFHDIKFYYWEEPFLFKYCSDQLFRR 1338
++ N D++ S PN+S+Q RK F+ +
Sbjct: 295 VMHDNKLQTIIHDLI---ADGASHPNYSFQNRKLFYKG--------------------KL 331
Query: 1339 CIP--ETEIESVLKFCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNFVRLCDRCQR 1396
+P ++I ++L+ HS GG+ G +T + L + +YW L KD FV C+ CQ+
Sbjct: 332 VLPRNSSKIPTLLQEYHSSPIGGHSGFFRTYKK-LGALVYWEGLKKDIQQFVASCEICQQ 390
Query: 1397 LGNISKRHEMPLNSILE-----VEIFDIWGLDFMGPFPPSYSNQYILVAVDYVSKWAEAV 1451
+K + +L+ +++ +DF+ P S+ I V VD +K+A +
Sbjct: 391 ----NKYQTLSPAGLLQPLPIPTQVWKDISMDFIEGLPRSHGKDTIFVVVDRFTKYAHFI 446
Query: 1452 ALPNN-DAKSVMS-FIKKNIFTRHGTPRAIITDGGKHFCNKYLDSLLAKYGVTHRVGTPY 1509
L + AKSV F+++ + T+ + T Y
Sbjct: 447 PLSHPFTAKSVAEVFVQEVVRTK------------------------------LKFSTAY 476
Query: 1510 HPQTSGQVEVTNREIKKILETTVGQSRKDWSKKLDDALWAYRTAFKTPIGMSPYRMVYGK 1569
HPQT GQ EVTNR ++ L G + W K L A + + + + + +P+ +YG+
Sbjct: 477 HPQTDGQTEVTNRCLETYLRCLTGAKPRLWVKWLGWAEFWFNSNYNSSTRTTPFNALYGR 536
>IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H fold
chr06_pseudomolecule_IMGAG_V3 15275871-15277296 E
EGN_Mt090430 20090702
Length = 445
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 192/395 (48%), Gaps = 24/395 (6%)
Query: 1287 PWYADIVNYLVCKISPPNFSYQQRKKFFHDIKFYYWEEPFLFKYCSDQLFRRCIPETEIE 1346
PWY DI +L+ + PP S Q +K + + L+K D + RC+ E E E
Sbjct: 43 PWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAE 102
Query: 1347 SVLKFCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEM 1406
++ H G + + ++L +G YW + D Y + R C +CQ +
Sbjct: 103 QLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPH 162
Query: 1407 PLNSILEVEIFDIWGLDFMGPFPPSYSN--QYILVAVDYVSKWAEAVALPNNDAKSVMSF 1464
LN + F +WG+D +G P SN ++ILVA+DY +KW F
Sbjct: 163 ALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKW----------------F 206
Query: 1465 IKKNIFTRHGTPRAIITDGGKHFCNKYLDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREI 1524
IK NI R+G P IITD G + N + +L ++ + H +PY PQ +G VE N+ I
Sbjct: 207 IKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI 266
Query: 1525 KKILETTVGQSRKDWSKKLDDALWAYRTAFKTPIGMSPYRMVYGKACHLPVELEHKAFWA 1584
K+I++ V + KDW + L AL YRT ++ G +P+ +VYG LP+E+E +
Sbjct: 267 KRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRV 325
Query: 1585 IQFLNFNTKEVGQKXLLQLNMMDEMSLHAYESAKIYKDRTKQWHDKRIIMRDLKVGQQVL 1644
I + E Q QLN+++E + A + Y+ R K DK++ R+ KVG+ VL
Sbjct: 326 IMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL 385
Query: 1645 LYNSRLRLFP---GKLRSRWSGPFTIKEIFPHGAI 1676
R+ P GK + GP+ +K+ F GA+
Sbjct: 386 --KRRVSQQPDPRGKWTPNYEGPYVVKKAFSGGAL 418
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 194 bits (492), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 137/227 (60%), Gaps = 18/227 (7%)
Query: 860 WVSPVQVVPKKGGMTAISNENNELIPTRTVTGWRVCIDYRKLNKATRKDHFPLPFIDQML 919
WV+ + VPKK G R+C+D+R LNKA+ KD+FPLP ID ++
Sbjct: 8 WVANIVPVPKKDGKV------------------RMCVDFRDLNKASPKDNFPLPHIDVLV 49
Query: 920 ERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCM 979
+ A + F+DG+SGY QI ++PED+EKT+F P+GTF Y+ MPFGL NA AT+QR M
Sbjct: 50 DNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGM 109
Query: 980 MSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLSLVMQRCEDTNLVLNWEKCHFMVSEGI 1039
++F DM+ K +EV++DD V + + + L+ + +R L LN KC F V G
Sbjct: 110 TTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGK 169
Query: 1040 VLGHKISQKGIEVDKAKIEVIEKLPPPNTVKGIRSFLGHAGFYRRFI 1086
+LG +SQKGIEVD K+ I ++P P T K +R FLG + RFI
Sbjct: 170 LLGFVVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFI 216
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 181/392 (46%), Gaps = 19/392 (4%)
Query: 836 KEVVKAEIIKLLDAGIIYPISDSNWVSPVQVVPKKGGMTAISNENNELIPTRTVTGWRVC 895
++VV E+ KL+DA I I W++ +V K+ G WR+C
Sbjct: 6 RKVVDEEVKKLVDARFISEIKYPTWLANTVLVKKENG------------------KWRMC 47
Query: 896 IDYRKLNKATRKDHFPLPFIDQMLERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFTCP 955
+DY LN K +PLP ID +++ +G+ F+D YSGY QI + P D KT F
Sbjct: 48 VDYTDLNMVCPKYPYPLPNIDHLIDNASGFKTLSFMDAYSGYNQIRMDPLDAPKTAFMTN 107
Query: 956 YGTFAYRRMPFGLCNAPATFQRCMMSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLSLV 1015
+ Y M FGL NA ATFQR M + FS + + EV++DD + +L +
Sbjct: 108 TKNYHYEVMYFGLKNAGATFQRSMDTAFSQQIGRNREVYIDDLVAKTKEGLSHTDDLEEI 167
Query: 1016 MQRCEDTNLVLNWEKCHFMVSEGIVLGHKISQKGIEVDKAKIEVIEKLPPPNTVKGIRSF 1075
+ + + LN KC F V G LG +++ GIE + K + I + P+ VK ++
Sbjct: 168 LGQVRKYRIRLNPTKCSFGVQVGKFLGFLLTRWGIEANTDKCQAIINMRSPSNVKEVQQL 227
Query: 1076 LGHAGFYRRFIKDFSKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWT 1135
G R + + K F++ EC DAF ++K L S P++ P+
Sbjct: 228 TGRLAALSRCLSCAGDKAFSFFASIKKKEKFEWTAECEDAFQQIKMFLSSLPLLQRPNKN 287
Query: 1136 LPFELMCDASDHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDKF 1195
L S++A+ VL + + IYY SR A+L Y E LA+V K
Sbjct: 288 AIIFLYLVISENAMSTVLVEESEVGEKPIYYVSRVFKGAKLPYQKIECLALAVVTTARKL 347
Query: 1196 RAYLIGAKTIVYTDHSAIKYLLEKKDAKPRLI 1227
R Y K +V +++ I+ +L K D R++
Sbjct: 348 RPYFQSHKIVVKSNY-PIRQVLGKPDLAGRMV 378
>IMGA|Medtr2g080870.1 Peptidase aspartic, catalytic
chr02_pseudomolecule_IMGAG_V3 18773924-18773065 H
EGN_Mt090430 20090702
Length = 229
Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/134 (57%), Positives = 99/134 (73%)
Query: 567 KLPPKLKDPGSFSIPCNIGNLDFEKALADLGASINLMSYEVFKMLGMGELKPTRMSLQLA 626
++P K DPGSF+IPC+IGNL+ KAL DLG SINL+ + K LG +K RM+L L
Sbjct: 61 RIPQKKTDPGSFTIPCSIGNLNINKALCDLGTSINLIPLSMMKKLGNLVVKLARMTLSLV 120
Query: 627 DRSIKYPRGIVEDVLVKVGTFIFPVDFVILDIDEDREGSLILGRPFLATARALIDVYEGK 686
D SIK+P +VEDVLVKVG F+FPVDFVI+D+ ED + L+LGRPFLAT RA+ID+ G+
Sbjct: 121 DCSIKHPFTVVEDVLVKVGRFVFPVDFVIMDMKEDNDCPLLLGRPFLATGRAMIDMDVGE 180
Query: 687 LTLRVGQEEIVFDV 700
+ LR+ E I F+V
Sbjct: 181 VMLRIKDEHIEFNV 194
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 134 bits (337), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 98/159 (61%), Gaps = 18/159 (11%)
Query: 860 WVSPVQVVPKKGGMTAISNENNELIPTRTVTGWRVCIDYRKLNKATRKDHFPLPFIDQML 919
WV+ + VPKK G R+C+D+R LNKA+ KD+FPLP ID ++
Sbjct: 8 WVANIVPVPKKDGKV------------------RMCVDFRDLNKASPKDNFPLPHIDVLV 49
Query: 920 ERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCM 979
+ A + F+DG+SGY QI ++PED+EKT+F P+GTF Y+ M FGL NA AT+QR M
Sbjct: 50 DNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMSFGLINAGATYQRGM 109
Query: 980 MSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLSLVMQR 1018
++F DM+ K +EV++DD V + + + L+ + +R
Sbjct: 110 TTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFER 148
>IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
13291307-13288982 H EGN_Mt090430 20090702
Length = 695
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 139/308 (45%), Gaps = 22/308 (7%)
Query: 1272 SFPHEQLLLVANAQTPWYADIVNYLVCKISPPNFSYQQRKKFFHDIKFYYWE-EPFLFKY 1330
S ++ L + W I+ YL P Q K IKF + F+ +
Sbjct: 318 SIEQKEFLFLTEDFKSWMGHIIRYLKDDQLPME-EEQASKVKKRAIKFVVIAYQLFIRGF 376
Query: 1331 CSDQLFRRCIPETEIESVLKFCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNFVRL 1390
S L +C+ + E V+ CG + G AA++L +G YWP + +D +V+
Sbjct: 377 SSPHL--KCLAPQQAEYVIAEVDEGVCGTHIGGRALAAKVLRAGYYWPTMKEDCSKYVKK 434
Query: 1391 CDRCQRLGNISKRHEMPLNSILEVEIFDIWGLDFMGPFPPSYSN-QYILVAVDYVSKWAE 1449
CD+ ++ F WG+D +GPFP + ++++VAVDY +KW E
Sbjct: 435 CDK-----------------LISPWPFFKWGVDILGPFPLAQGQLKFLIVAVDYFTKWIE 477
Query: 1450 AVALPNNDAKSVMSFIKKNIFTRHGTPRAIITDGGKHFCNKYLDSLLAKYGVTHRVGTPY 1509
+ A + F K I G P ++TD G + + + + ++G+
Sbjct: 478 VELVATITADRIKKFYWKKIICNFGLPAVLVTDKGTQYASSSMANFCKEWGIKLNFTLVK 537
Query: 1510 HPQTSGQVEVTNREIKKILETTVGQSRKDWSKKLDDALWAYRTAFKTPIGMSPYRMVYGK 1569
HPQ++GQ E N+ I + L+ + ++ W ++L +W+Y T + +P+R+VYG
Sbjct: 538 HPQSNGQAESANKVILQGLKKRLEAAKGLWVEELPMVMWSYHTTPHSSTQETPFRIVYGS 597
Query: 1570 ACHLPVEL 1577
+P+++
Sbjct: 598 DAMIPIQV 605
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 7/193 (3%)
Query: 1045 ISQKGIEVDKAKIEVIEKLPPPNTVKGIRSFLGHAGFYRRFIKDFSKITKPLCNLLVKDA 1104
++++G+EV+ K + I + P K ++ G RF+ + P LL K+
Sbjct: 2 LTRRGVEVNPEKCKAIMDMRSPTDAKEVQKLTGRIASLTRFLSCSADKNLPFFQLLPKNE 61
Query: 1105 PFDFDKECLDAFNRLKKELISAPIITTPDWTLPFELMCDASDHAVGAVLGQRKDKKLHVI 1164
F + +EC AF +LK+ L + PI+ P + P L S+HA + L Q K+ +
Sbjct: 62 NFCWTEECEGAFQKLKEFLTTPPILVKPKLSAPLILYLAVSEHACSSALVQEVRKEQKPV 121
Query: 1165 YYASRTLNDAQLNYATTEKELLAIVFAFDKFRAYLIGAKTIVYTDHSAIKYLLEKKDAKP 1224
Y+ S+ L+ A++ Y EK LA+V + K R Y + TI+ + I+ +L+K D
Sbjct: 122 YFTSKVLHGAEVRYQKIEKVALALVSSARKLRPYF-QSHTIIVRTNQPIRQVLQKPDLAG 180
Query: 1225 RLI------RWVL 1231
R+I +WVL
Sbjct: 181 RMIECMEAAKWVL 193
>IMGA|Medtr5g105390.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 42329455-42328322 E
EGN_Mt090430 20090702
Length = 244
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 16/207 (7%)
Query: 1371 LESGLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEMPLNSILEVEIFDIWGLDFMGPFPP 1430
+ +G +WP + KDA ++V LCD+CQR G++ L S++ F WG+
Sbjct: 1 MRAGYFWPTMLKDAQDYVNLCDKCQRHGDMHLAPPAELTSLISPWPFAWWGI-------- 52
Query: 1431 SYSNQYILVAVDYVSKWAEAVALPNNDAKSVMSFIKKNIFTRHGTPRAIITDGGKHFCNK 1490
VA+DY +KW EA L AK+V+ F K+NI R G P +I++ G F ++
Sbjct: 53 --------VAIDYSTKWIEAEPLAKITAKNVLRFFKRNILARFGVPALVISNNGSQFTDQ 104
Query: 1491 YLDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKKILETTVGQSRKDWSKKLDDALWAY 1550
L + + HPQ G E NR I + + + ++ +++L LW+Y
Sbjct: 105 KFQDYLRNIDIKQSFTSVEHPQAHGLAEAANRVILRGIRRRLDATKTKRAEELHTVLWSY 164
Query: 1551 RTAFKTPIGMSPYRMVYGKACHLPVEL 1577
RT + SP+R+ YG +P+EL
Sbjct: 165 RTTPHSTTSESPFRLTYGTKAVIPIEL 191
>IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fold
AC233082.3 16225-8671 H EGN_Mt090430 20090702
Length = 695
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 175/420 (41%), Gaps = 60/420 (14%)
Query: 1111 ECLDAFNRLKKELISAPIITTPDWTLPFELMCDASDHAVGAVLGQRKDKKLHVIYYASRT 1170
E AF LK + + P++ PD++ F + DAS A+GAVL Q H + + S+
Sbjct: 2 EADKAFTTLKIHMTTMPVLHLPDFSKTFVVETDASAVAIGAVLSQEG----HPLAFFSKK 57
Query: 1171 LNDAQLNYATTEKELLAIVFAFDKFRAYLIGAKTIVYTDHSAIKYLLEKKDAKPRLIRWV 1230
+ + +E+ A+ + +YTD +++ LL +K P +W
Sbjct: 58 MTPKMQAASVYVREMFAVTES--------------IYTDQKSLRNLLLQKIQTPEQQKWA 103
Query: 1231 LLLQEFDLEIRDKKGTENLVADHLSRLELGEEDTSELQINESFPHEQLLLVANAQTPWYA 1290
LQ F+ EI + G NL AD L + + + I + +P
Sbjct: 104 SKLQGFNFEIHYRPGKTNLAAD-----ALSRKTQATISI-----------LFTMTSPLPT 147
Query: 1291 DIVNYLVCKISPPNFSYQQRKKFFHDIKFYYWEEPFLFKYCSDQLFRRCIPETEIESVLK 1350
I + F + K HD+ + + S CI +T+ ++
Sbjct: 148 IITQFQ-------KFYASKGKTLVHDLLAVNEDS-----HYSSSPMDCCIIKTDCLYLIT 195
Query: 1351 FCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEMPLNS 1410
T AR L + YWP L+ FV+ C CQ+ N +++ L +
Sbjct: 196 -----------KTGPTVAR-LAASFYWPGLYTAVKEFVKNCATCQQSKNQTQKKLGLLQA 243
Query: 1411 I-LEVEIFDIWGLDFMGPFPPSYSNQYILVAVDYVSKWAEAVALPNN-DAKSVMSFIKKN 1468
+ + ++++ +DF+ P S+ + I V D ++K+ +ALP+ A+ + +
Sbjct: 244 LPIPSQVWEELTMDFITHLPNSFGHTVIWVICDRLTKYVHFIALPSKFTAEDLANRFSVE 303
Query: 1469 IFTRHGTPRAIITDGGKHFCNKYLDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKKIL 1528
I HG P+ II+D F +K+ L G R T YHP+T GQ EV NR ++ L
Sbjct: 304 ICRLHGIPKTIISDRDPLFLSKFWKELFKTQGTQLRFSTAYHPETDGQTEVVNRTLESYL 363
>IMGA|Medtr6g028320.1 Polynucleotidyl transferase, Ribonuclease H fold
chr06_pseudomolecule_IMGAG_V3 6407540-6406225 E
EGN_Mt090430 20090702
Length = 379
Score = 117 bits (292), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 173/390 (44%), Gaps = 41/390 (10%)
Query: 1330 YCSDQLFRRCIPETEI--ESVLKFCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNF 1387
Y D+++ +P+T+ +++ HS G+ G T +R L + WP + D F
Sbjct: 13 YFKDRIY---VPDTQQWRTTIMTEFHSTPTAGHSGLKPTLSR-LSASFLWPGTYTDVKQF 68
Query: 1388 VRLCDRCQRLGNISKRHEMPLNSI-LEVEIFDIWGLDFMGPFPPSYSNQYILVAVDYVSK 1446
+R C CQ+ + + + L + + +++D +DF+ P S+ + + V D +SK
Sbjct: 69 IRNCHTCQQNKYMLTKKQGLLQPLPIPDKVWDELTMDFITHLPASFRHTVVWVICDRLSK 128
Query: 1447 WAEAVALPNN-DAKSVMSFIKKNIFTRHGTPRAIITDGGKHFCNKYLDSLLAKYGVTHRV 1505
+ +ALP A+ + + I HG P+ I +D F +++ L G +
Sbjct: 129 YVHFIALPTKFAAQDLANRFSTEICRLHGIPKTITSDRDPLFLSQFWKELFRTQGTIMQY 188
Query: 1506 GTPYHPQTSGQVEVTNREIKKILETTVGQSRKDWSKKLDDALWAYRTAFKTPIGMSPYRM 1565
T YHP+T GQ EV NR ++ L K W K L A + Y ++F T I MSP+
Sbjct: 189 STTYHPETDGQTEVVNRSLETYLRCFASDHPKHWFKFLHLAEFWYNSSFHTAIQMSPFEA 248
Query: 1566 VYGKACHLPVELEHKAFWAIQFLNFNTKEVGQKXLLQLNMMDEMSLHAYESAKIYKDRT- 1624
+YG+ P L++ A N ++ Q L N+ + ++ + + R
Sbjct: 249 LYGRTP--PTILDYVA---------NQTQIPQ---LNANLQNRQTILTTLKQNLRRTRQL 294
Query: 1625 --KQWHDKR----------IIMRDLKVGQQVLLYNSRLRLFPGKLRSRWSGPFTIKEIFP 1672
Q + KR +++R QQ + + R+ P KL R+ GPF +
Sbjct: 295 MEVQANKKRRDCVFYPGDLVLLRLQPYRQQTV----QRRVGP-KLSKRFFGPFIVIRRIG 349
Query: 1673 HGAIEI-VDGKSNRSFKVNAQRLRSYHSEN 1701
A E+ + S V+ +LR+YH E+
Sbjct: 350 SVAYELDLPPSSKIHLVVHISQLRAYHGEH 379
>IMGA|Medtr3g068370.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 15932594-15933743 H
EGN_Mt090430 20090702
Length = 165
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 74/141 (52%), Gaps = 36/141 (25%)
Query: 1383 DAYNFVRLCDRCQRLGNISKRHEMPLNSILEVEIFDIWGLDFMGPFPPSYSNQYILVAVD 1442
D + FV D+CQ GNISK +AV+
Sbjct: 57 DVHAFVARWDQCQCTGNISK------------------------------------IAVN 80
Query: 1443 YVSKWAEAVALPNNDAKSVMSFIKKNIFTRHGTPRAIITDGGKHFCNKYLDSLLAKYGVT 1502
YVSKW EA A P ND + + K+ IF R G PR +I+DGG HF ++ +++L K GV
Sbjct: 81 YVSKWNEATASPTNDTRVAIKIFKQKIFPRFGVPRLVISDGGSHFISRQFENILKKRGVK 140
Query: 1503 HRVGTPYHPQTSGQVEVTNRE 1523
H V TPYHPQTSGQVEV+NRE
Sbjct: 141 HIVATPYHPQTSGQVEVSNRE 161
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 1231 LLLQEFDLEIRDKKGTENLVADHLSRLELGEEDTSELQINESFPHEQLLLVANAQTPWYA 1290
L LQEFDL IRDKK TEN+VADHLSRL + D EL +++ FP ++ L+A+ ++ +A
Sbjct: 5 LQLQEFDLYIRDKKETENVVADHLSRLSDNKRD--ELPLDDFFPDDR--LIASVKSDVHA 60
Query: 1291 DIVNYLVCKIS 1301
+ + C+ +
Sbjct: 61 FVARWDQCQCT 71
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 6/183 (3%)
Query: 894 VCIDYRKLNKATRKDHFPLPFIDQMLERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFT 953
+ ++Y L++ KD +PL ID++++ +GY + F+D +S Y QIP+ P+D++KTTF
Sbjct: 1 MSVEYSDLSRVCPKDTYPLINIDKLVDNSSGYKLFSFMDFFSMYNQIPLDPKDEDKTTFM 60
Query: 954 CPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDMVEKFIEVFMDDFSV-FGSSFDACLHNL 1012
G Y M F L N T+QR M +F D + ++V MDD V + D H L
Sbjct: 61 VEAGNHFYVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLKVCMDDMIVKYREELDHMSH-L 119
Query: 1013 SLVMQRCEDTNLVLNWEKCHFMVSEGIVLGHKISQKGIEV--DKAKIEVIEKLPPPNTVK 1070
++V + N+ N E C F V +G +++KGI+V D K EV +LP K
Sbjct: 120 NVVFIKVRKYNMHSNLENCTFGVKAAKFMGLYLTEKGIKVNPDNFKAEVDMELPMKK--K 177
Query: 1071 GIR 1073
GI+
Sbjct: 178 GIQ 180
>IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
21895306-21893422 E EGN_Mt090430 20090702
Length = 306
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 154/306 (50%), Gaps = 31/306 (10%)
Query: 971 APATFQRCMMSIFSDMVEKFIEVFMDDFSVFGSS-FDACLHNLSLVMQRCEDTNLVLNWE 1029
+P FQR M +I + + F +++DD VF + D + LV+ +C + +VL+ +
Sbjct: 4 SPGIFQRRMDTILKEFKD-FCLIYIDDILVFSNKDLDDHFKKVELVLNKCFEHGVVLSKK 62
Query: 1030 KCHFMVSEGIVLGHKISQKGIEVDKAKI----EVIEKLPP-PNTVKG---IRSFLGHAGF 1081
K +V +KI+ G+E++K K V+EKL P +K ++ FLG +
Sbjct: 63 K-------AVVAQNKINYLGLEIEKGKFLMQKHVLEKLQKFPTKLKDKKELQRFLGLLTY 115
Query: 1082 --YRRFIKDFSKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWTLPFE 1139
Y FIK+ + +K L L KD+ + + ++ +LK P + P
Sbjct: 116 ISYEGFIKNLAAESKLLQQKLKKDSIWSWTEDDEVLITKLKNLCQDLPELYHPSDDDLII 175
Query: 1140 LMCDASDHAVGAVL-----GQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDK 1194
+ DAS+ G V+ GQ+K+ + Y S T +D+++NY T EKE LA++ +K
Sbjct: 176 IETDASNKYWGGVMKAKPPGQKKE---LLCRYMSGTFSDSEINYPTHEKETLAVIRMLEK 232
Query: 1195 FRAYLIGAKTIVYTDHSAI---KYLLEKKDAKP-RLIRWVLLLQEFDLEIRDKKGTENLV 1250
R Y++ + IV TD + + K + K K RLIRW + L E++ I KG +N++
Sbjct: 233 HRIYVLDKEFIVRTDSTYVAGFKNINHKGTYKQGRLIRWQMKLAEYNYSISHIKGEKNVL 292
Query: 1251 ADHLSR 1256
AD LSR
Sbjct: 293 ADILSR 298
>IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13291757-13291422 H EGN_Mt090430 20090702
Length = 111
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%)
Query: 894 VCIDYRKLNKATRKDHFPLPFIDQMLERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFT 953
+C DY LNK KD +PLP IDQ++ + Y F+D YSGY +I + ED+EKT F
Sbjct: 1 MCTDYTNLNKVCPKDAYPLPSIDQLVHNTSRYDLLSFMDAYSGYNKIRMHLEDEEKTAFM 60
Query: 954 CPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDMVEKFIEVFMDDFSV 1000
+ Y+ MPFGL N ATFQR + +F + K IEV++DD V
Sbjct: 61 TDKANYCYKGMPFGLRNTGATFQRLVDKVFKSEIGKTIEVYVDDMVV 107
>IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 14035625-14034550 H
EGN_Mt090430 20090702
Length = 270
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 20/207 (9%)
Query: 1280 LVANAQTPWYADIVNYLVCKISPPNFSYQQ----RKKFFHDIKFYYWEEPFLFKYCSDQL 1335
L+ + W A ++ YL +P + +Q R F ++ L+K
Sbjct: 12 LIIEREESWMATLLKYLTGSFTPVSAEEEQVVRKRASKFVNVSRK------LYKRGRTNP 65
Query: 1336 FRRCIPETEIESVLKFCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNFVRLCDRCQ 1395
RC+ E E VL H CG + AA++L SG YWP + D+ +FVR CD+CQ
Sbjct: 66 LLRCLGEDETHLVLLEVHEGVCGSHIRGRALAAKLLRSGYYWPTMLHDSSDFVRKCDKCQ 125
Query: 1396 RLGNISKRHEMP--LNSILEVEIFDIWGLDFMGPFPPSYSN-QYILVAVDYVSKWAEAVA 1452
+ K+H + L S+ F IW +D +GPFP + ++++V VDY +KW EA A
Sbjct: 126 KFSY--KKHALAQKLTSVYSPWPFHIWAVDIVGPFPLAPGQLEFLIVGVDYFTKWIEAEA 183
Query: 1453 LPNNDA-----KSVMSFIKKNIFTRHG 1474
+ A K +++ IKK + G
Sbjct: 184 VAKITAERSANKVILNGIKKKLEAAKG 210
>IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
44106402-44105385 H EGN_Mt090430 20090702
Length = 308
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 18/185 (9%)
Query: 784 RLLQVLNRHKKALGWHILDLQGISPSVCMHKILMEEDYKPSIEHQRRLNPNMKEVVKAEI 843
+L+ L ++ W D+ I PSV H++ ++ + +R+ +P + +
Sbjct: 142 QLVACLKQNPDLFAWSRADMPVIDPSVACHQLTVDPGISVVAQRRRKQSPEKSVAAEKTV 201
Query: 844 IKLLDAGIIYPISDSNWVSPVQVVPKKGGMTAISNENNELIPTRTVTGWRVCIDYRKLNK 903
L+ I + W+S V +V K G WR+ +DY LN+
Sbjct: 202 KDFLEEKFILEAKYTTWLSNVVLVKKSNGK------------------WRMSVDYTDLNR 243
Query: 904 ATRKDHFPLPFIDQMLERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFTCPYGTFAYRR 963
KD +PLP ID++++ +G+ F+D Y GY QIP+ D+ KTTF G + Y
Sbjct: 244 VCPKDAYPLPNIDKLVDNSSGFKLLSFMDAYFGYNQIPMVEGDKMKTTFMTESGNYYYNV 303
Query: 964 MPFGL 968
MPFGL
Sbjct: 304 MPFGL 308
>IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87913 H
EGN_Mt090430 20090702
Length = 142
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 1338 RCIPETEIESVLKFCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNFVRLCDRCQRL 1397
+C+ E + VL H CG + A ++L +G YWP + KDA ++V LCD+CQR
Sbjct: 16 KCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQRH 75
Query: 1398 GNISKRHEMPLNSILEVEIFDIWGLDFMGPFPPSYSN-QYILVAVDYVSKWAEAVALPNN 1456
G++ + L S++ F WG+D +GPFP + +Y++VA++Y +KW E L
Sbjct: 76 GDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIEVEPLAKI 135
Query: 1457 DAKS 1460
AK+
Sbjct: 136 KAKN 139
>IMGA|Medtr3g061900.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 14169077-14168364 H
EGN_Mt090430 20090702
Length = 237
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 10/197 (5%)
Query: 1380 LFKDAYNFVRLCDRCQRLGNISKRHE-----MPLNSILEVEIFDIWGLDFMGPFPPSYSN 1434
+ KD N+V+ C+ CQ N + H+ PL I + DI +DF+ PPS
Sbjct: 1 MIKDVKNYVKTCEICQ--ANKASNHKSYGLLQPL-PIPQQAWEDI-SMDFVTHLPPSNGK 56
Query: 1435 QYILVAVDYVSKWAEAVALPNN-DAKSVMSFIKKNIFTRHGTPRAIITDGGKHFCNKYLD 1493
I V VD SK A + LP + A S+ I+ HG P+ I++D + F +K+
Sbjct: 57 TTIWVIVDRFSKSAHFIPLPTHYTAMSLAPLFLTEIYRLHGMPKTIVSDRDRIFVSKFWK 116
Query: 1494 SLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKKILETTVGQSRKDWSKKLDDALWAYRTA 1553
+ G T + YHP++ GQ EV NR ++ L + W L A + Y ++
Sbjct: 117 EIFRLSGTTLAFSSAYHPESDGQTEVVNRILQTYLRCFAYDAPNRWLNYLHLAEFWYNSS 176
Query: 1554 FKTPIGMSPYRMVYGKA 1570
+++ I MSP++ VYG+A
Sbjct: 177 YQSSIRMSPFQAVYGRA 193
>IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical,
chr05_pseudomolecule_IMGAG_V3 20065664-20063904 H
EGN_Mt090430 20090702
Length = 460
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 155/387 (40%), Gaps = 111/387 (28%)
Query: 1051 EVDKAKIEVIEKLPPPNTVKGIRSFLGHAGFYRRFIKDFSKITKPLCNLLVKDAPFDFDK 1110
+VD+ K+ I P P +V RSF G A FYRRFI+ FS IT P+ L K +
Sbjct: 168 QVDEEKVRAIRDWPAPTSVTEKRSFHGLATFYRRFIRYFSIITAPITKCLEK-GKLKWGS 226
Query: 1111 ECLDAFNRLKKELISAPIITTPDWTLPFELMCDASDHAVGAVLGQRKDKKLHVIYYASRT 1170
E +F +KK+L +AP++ P++ F++ CD S
Sbjct: 227 EQEQSFALIKKKLCAAPVLPLPNFEKVFQVECDDS------------------------- 261
Query: 1171 LNDAQLNYATTEKELLAIVFAFDKFRAYLIGAKTIVYTDHSAIKYLLEK----KDAKPRL 1226
A ++ YLI + I++TDH A+K+L + KDA+
Sbjct: 262 --------------------ALRQWEHYLIHREFILFTDHQALKFLHSQKVINKDARS-- 299
Query: 1227 IRWVLLLQEFDLE-----IRDKKGTENLVADHLSRLELGEEDTSELQINESFPHEQLLLV 1281
+ EF + I+ K G N VAD LSR LV
Sbjct: 300 ------VGEFSAKIFPFIIQHKYGALNKVADALSR-------------------RAYFLV 334
Query: 1282 ANAQTPWYADIVNYLVCKISPPNFSYQQRKKFFHDIKFYYWEEPFLFKYCSD------QL 1335
+Q ++V++ K + F ++K E P C+D L
Sbjct: 335 TLSQ-----EVVDFECLK------ELHESDAKFKELKAKCKERP-----CADFYIREGYL 378
Query: 1336 FRRCIPETEI-ESVLKFCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNFVRLCDRC 1394
F CIP + + + +++ HS G+ G KT A +E YWP+L KD V+ C C
Sbjct: 379 FILCIPCSPLRDKLIRDLHSGGLSGHMGQDKTIAS-MEGRFYWPHLRKDVGTIVKKCYTC 437
Query: 1395 QRLGNISKRHEMPLNSILEVEI-FDIW 1420
Q +SK + + I +DIW
Sbjct: 438 Q----VSKGQSQNTCLYMSLPIPYDIW 460
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 36/176 (20%)
Query: 813 HKI-LMEEDYKPSIEHQRRLNPNMKEVVKAEIIKLLDAGIIYPISDSNWVSPVQVVPKKG 871
HKI L+ P++ H R ++ E+V+ +I LL G I S S+ PV +VPKKG
Sbjct: 34 HKIDLIPCSSLPNLPHYR-MSSKENEIVREQIEDLLRKGFIRE-SMSSCDVPVLLVPKKG 91
Query: 872 GMTAISNENNELIPTRTVTGWRVCIDYRKLNKATRKDHFPLPFIDQMLERLAGYPFYCFL 931
WR C++ R +NK T K FP+P ++ ML+
Sbjct: 92 NQ------------------WRKCVESRVINKITIKYQFPIPRLEDMLDEFQN------- 126
Query: 932 DGYSGYFQIPIAPEDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDMV 987
+ I P D+ +T F G + MPF L NAP+TF R M + + V
Sbjct: 127 --------LRIRPGDERQTYFKSKDGLYESLVMPFRLSNAPSTFMRLMNQVDEEKV 174
>IMGA|AC137826_25.1 Putative retroelement pol polyprotein, AC137826.21
94942-94563 H EGN_Mt090430 20090702
Length = 85
Score = 89.0 bits (219), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 20/103 (19%)
Query: 1316 DIKFYYWEEPFLFKYCSDQLFRRCIPETEIESVLKFCHSMECGGYFGASKTAARILESGL 1375
D+K Y+ ++P+LF+ C+D L R +P+ E+ SVL+ CHS GG+
Sbjct: 3 DVKNYFLDDPYLFRSCADGLIRLYVPKIEMLSVLESCHSPPVGGHH-------------- 48
Query: 1376 YWPNLFKDAYNFVRLCDRCQRLGNISKRHEMPLNSILEVEIFD 1418
DAY F + CDRCQR G IS R E+PLN IL +E+FD
Sbjct: 49 ------SDAYEFAKGCDRCQRDGGISTRQELPLNLILVIELFD 85
>IMGA|Medtr4g073750.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 14702670-14703735 H
EGN_Mt090430 20090702
Length = 331
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 117/269 (43%), Gaps = 44/269 (16%)
Query: 1303 PNFSYQQRKKFFHDIKFYYWEEPFLFKYCSDQLFRRCIPE--TEIESVLKFCHSMECGGY 1360
P ++++ RK FF D R +P+ + I ++LK HS GG+
Sbjct: 8 PGYTFKDRKLFFID--------------------RLVLPKGSSRIPNLLKDYHSSAVGGH 47
Query: 1361 FGASKTAARILESGLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEMPLNSILEVEIFDIW 1420
+T RI + +YW + KD V C+ CQ ++K + +L+
Sbjct: 48 SRFFRTYKRIY-AIIYWEGMRKDIQQIVATCETCQ----LNKYQTLSPTGLLQ------- 95
Query: 1421 GLDFMGPFPPSYSNQYILVAVDYVSKWAEAVALPNNDAKSVMSFIKKNIFTRHGTPRAII 1480
P P + + +++D++ +A + D SFIK+ + HG P I+
Sbjct: 96 ------PLPIP-TQVWTDISMDFIEGLPKAHGKKSKDVAE--SFIKE-VIKLHGFPSTIV 145
Query: 1481 TDGGKHFCNKYLDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKKILETTVGQSRKDWS 1540
+D K F + + L G + + YHPQT GQ EV NR ++ L G K W
Sbjct: 146 SDRDKIFLSHFWSELFRTAGTKLKFSSAYHPQTDGQTEVANRCLETYLRCLTGTKPKQWR 205
Query: 1541 KKLDDALWAYRTAFKTPIGMSPYRMVYGK 1569
K L A + + T + + + +P++ +YG+
Sbjct: 206 KWLGWADFWFNTNYNSSLKQTPFKTLYGR 234
>IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
44103723-44102826 H EGN_Mt090430 20090702
Length = 258
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 1344 EIESVLKFCHSMECGGYFGASKTAARILESGLYWPNLFKDAYNFVRLCDRCQRLGNISKR 1403
E + VL H CG + GA A +IL +G YWP + KD +++ LCD+CQR G++
Sbjct: 153 ETQEVLADVHDGICGQHLGAKALAKQILRAGYYWPTMLKDTQDYMNLCDKCQRHGDMHLA 212
Query: 1404 HEMPLNSILEVEIFDIWGLDFMGPFPPSYSN-QYILVAVDY 1443
L ++ F WG+D +GPFP + +Y++VA+DY
Sbjct: 213 PPADLTLVVSPWPFAWWGIDILGPFPKAAGELKYLIVAIDY 253
>IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse transcriptase)
AC233082.3 16661-16311 H EGN_Mt090430 20090702
Length = 116
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 964 MPFGLCNAPATFQRCMMSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLSLVMQRCEDTN 1023
MPFGL NAP++FQ M + + +F+ VF DD ++ ++ L +L L++
Sbjct: 1 MPFGLSNAPSSFQSAMNDMLRPYLRRFVLVFFDDILIYSTNMADHLIHLRLILDLLVTNQ 60
Query: 1024 LVLNWEKCHFMVSEGIVLGHKISQKGIEVDKAKIEVIEKLPPPNTVKGIRSFLG 1077
V KC F V LGH IS +G++ D K+ I P P+++ +R FLG
Sbjct: 61 FVAKLSKCVFAVETVHYLGHVISAQGVKADPEKVTAITDWPKPHSLTALRGFLG 114
>IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 7063133-7061964 H
EGN_Mt090430 20090702
Length = 356
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 82/209 (39%), Gaps = 34/209 (16%)
Query: 1362 GASKTAARILESGLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEMPLNSI-LEVEIFDIW 1420
G KT R+ ++ +W + D FV C CQ +K+ L + L I++
Sbjct: 2 GTQKTYLRLFDN-FFWQGMRTDVQKFVSECSICQTTKYETKKPTGLLQPLPLPSAIWEDL 60
Query: 1421 GLDFMGPFPPSYSNQYILVAVDYVSKWAEAVALPNNDAKSVMSFIKKNIFTRHGTPRAII 1480
LDF+ PPS+ ILV SK A ALP N +
Sbjct: 61 SLDFITGLPPSHGFSVILVVAGRFSKGAHFGALPTNYSA--------------------- 99
Query: 1481 TDGGKHFCNKYLDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKKILETTVGQSRKDWS 1540
L G R+ T YHPQT GQ EV NR +++ + + V W
Sbjct: 100 -----------FKELFKLCGTKLRMSTAYHPQTDGQTEVLNRVLEQYIRSFVHNKPNQWY 148
Query: 1541 KKLDDALWAYRTAFKTPIGMSPYRMVYGK 1569
L A W+Y T+ + G SP+ + Y K
Sbjct: 149 SFLPLAEWSYNTSIHSATGFSPFYVTYDK 177
>IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein,
chr03_pseudomolecule_IMGAG_V3 44105220-44104602 H
EGN_Mt090430 20090702
Length = 181
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 24/203 (11%)
Query: 1026 LNWEKCHFMVSEGIVLGHKISQKGIEVDKAKIEVIEKLPPPNTVKGIRSFLGHAGFYRRF 1085
LN EKC F V G LG ++++GIE ++ K I +LP P++ K I+ G RF
Sbjct: 3 LNLEKCTFGVQAGKFLGFYLTERGIEANRDKCHAITELPTPHSKKCIQILNGMLIALSRF 62
Query: 1086 IKDFSKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWTLPFELMCDAS 1145
+ ++ P LL K+ F + EC +A N LK+ L + P+++ P S
Sbjct: 63 VAKSAEHALPFFKLLRKETKFGWTDECENALNHLKETLSAPPVLSRPYEGEVLYQYLSVS 122
Query: 1146 DHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDKFRAYLIGAKTI 1205
+A+G + Y +K LA++ A + R Y +
Sbjct: 123 SNALGP-----------------------ETRYQRIDKVALALLIAARRLRQYFLAHTVE 159
Query: 1206 VYTDHSAIKYLLEKKDAKPRLIR 1228
V TD I+ +L + D R+++
Sbjct: 160 VRTDQP-IRQILGRPDVAGRMMK 181
>IMGA|Medtr1g065530.1 pol, putative chr01_pseudomolecule_IMGAG_V3
13044999-13045410 H EGN_Mt090430 20090702
Length = 93
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 1613 AYESAKIYKDRTKQWHDKRIIMRDLKVGQQVLLYNSRLRLFPGKLRSRWSGPFTIKEIFP 1672
YE+ KIYK + K+WHD I R+L+VG++VLL+NSRL+LF KL+S+W GP I ++ P
Sbjct: 3 VYENTKIYKSKVKKWHDAIIQKRELEVGEKVLLFNSRLKLFSRKLQSKWYGPIVITKVSP 62
Query: 1673 HGAI 1676
+
Sbjct: 63 TAVV 66
>IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61
17375-18058 H EGN_Mt090430 20090702
Length = 227
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 2/187 (1%)
Query: 1081 FYRRFIKDFSKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWTLPFEL 1140
+ RFI ++ P LL K+ FD+ +C +A LK+ L + P+++ P+ L
Sbjct: 4 YLSRFIVKSTQHALPFLKLLRKEIKFDWIDKCENALKHLKEILSAPPVLSRPEQGEVLYL 63
Query: 1141 MCDASDHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDKFRAYLI 1200
S AV AVL + + +Y+ S+ L + EK LA++ A + R Y
Sbjct: 64 YLSISSTAVSAVLIRETAEGQKSVYFTSKKLLGPETRNQKIEKVALALLTASQRLRQYFF 123
Query: 1201 GAKTIVYTDHSAIKYLLEKKDAKPRLIRWVLLLQEFDLEIRDKKGTENLV-ADHLSRLEL 1259
IV D I+ +L + + R+++W L L EFD+ +K + V AD L+ +
Sbjct: 124 AHTVIVKIDQ-PIRQILGRPNVAGRMMKWSLELSEFDIHYESRKALKAQVFADFLTEMTF 182
Query: 1260 GEEDTSE 1266
E +E
Sbjct: 183 PTEYNTE 189
>IMGA|Medtr7g040300.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 9745425-9745697 H
EGN_Mt090430 20090702
Length = 90
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 96 SIQYGGLPSEDPNAHITNFLEICDTFKQNGVSEDAIKLRLFPFTLRDKARSWLQSCPAGS 155
S Q+ G ED N+H+T+F + C GVSE +LRLF ++L +A+ W+ + +G+
Sbjct: 5 SNQFSGKKMEDCNSHLTHFPDACSRINPTGVSEADKRLRLFGYSLTRRAKDWMDALTSGT 64
Query: 156 FTTWDELAQKFLAKFFPSSK 175
TWD+L ++F ++FP++K
Sbjct: 65 IKTWDQLKREFFDRYFPTAK 84
>IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 H
EGN_Mt090430 20090702
Length = 72
Score = 70.1 bits (170), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%)
Query: 904 ATRKDHFPLPFIDQMLERLAGYPFYCFLDGYSGYFQIPIAPEDQEKTTFTCPYGTFAYRR 963
A RKD +PLP ID++++ +GY + F+D YS Y QI +A D++KT F G + Y
Sbjct: 2 ACRKDAYPLPNIDKLVDNSSGYKLFSFMDTYSRYNQILMAEGDKKKTAFMTESGNYYYNV 61
Query: 964 MPFGLCNAPAT 974
MPFGL N AT
Sbjct: 62 MPFGLRNMGAT 72
>IMGA|Medtr7g008350.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 1176651-1177224 H
EGN_Mt090430 20090702
Length = 160
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 33/190 (17%)
Query: 83 FEIKPAIIQMLSTSIQYGGLPSEDPNAHITNFLEICDTFKQNGVSEDAIKLRLFPFTLRD 142
F+IK +++ L ++ Q+ G +ED NAH+T+FLE C T GVSE + RL ++L
Sbjct: 3 FDIKNSVMMNLKSN-QFSGKETEDCNAHLTHFLESCSTINPAGVSESEKQHRLCSYSLTG 61
Query: 143 KARSWLQSCPAGSFTTWDELAQKFLAKFFPSSKTTKLRNEIMTFAHHDQESLYEAWERFK 202
+AR GS ++L++ ++ S +W +
Sbjct: 62 RAR-------IGSMHYKEDLSRLGIS------------------------SRGSSWTEVQ 90
Query: 203 DLLRKCPHHSLPKWLQVQTFYNALSPNIKITLDAAAGGSFEKKGIDEAYELIEEMASNSH 262
+ + L + +Q F L PN ++ LDA GG+ + K D+ + LI+ M+ N
Sbjct: 91 ATVEEVSWSQLSEMDIMQAFTTGLKPNTRMLLDAYGGGTMKIKTSDDVHALIDNMSLN-E 149
Query: 263 YQNNTERRRT 272
Y+ +T+ T
Sbjct: 150 YRGHTKEEAT 159
>IMGA|Medtr5g062240.1 Enzymatic polyprotein, related
chr05_pseudomolecule_IMGAG_V3 21860503-21859935 H
EGN_Mt090430 20090702
Length = 175
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 1143 DASDHAVGAVLGQR--KDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDKFRAYLI 1200
DAS+ G V+ + KK + Y S T +D+++NY T EKE LA++ +K R Y++
Sbjct: 48 DASNKYWGGVMKAKPPGQKKELLCRYMSGTFSDSEINYPTHEKETLALIRMLEKHRIYVL 107
Query: 1201 GAKTIVYTDHSAI---KYLLEKKDAKP-RLIRWVLLLQEFDLEIRDKKGTENLVADHLSR 1256
+ IV TD + + K + K K RLIRW + L E++ I KG +N++AD LSR
Sbjct: 108 DKEFIVRTDSTYVAGFKNINHKGTYKQGRLIRWQMKLAEYNYSISHIKGEKNVLADILSR 167
>IMGA|Medtr4g073740.1 polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 14702170-14702511 H
EGN_Mt090430 20090702
Length = 113
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 1127 PIITTPDWTLPFELMCDASDHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELL 1186
PI+T PD++ F + DAS+ +GAVL Q + + S+ L+D + E+EL+
Sbjct: 5 PILTVPDFSKVFTIETDASNKGLGAVLLQEGRP----VAFHSQNLSDRAQSKLVYERELM 60
Query: 1187 AIVFAFDKFRAYLIGAKTIVYTDHSAIKYLLEKKDAKPRLIRW 1229
AIV A K+R YL+G I+ TD ++K L++++ +W
Sbjct: 61 AIVTAVQKWRHYLLGRHFIILTDQKSLKLLVDQRLLNEEQFKW 103
>IMGA|Medtr6g077290.1 Ribonuclease H, putative
chr06_pseudomolecule_IMGAG_V3 15274861-15275193 H
EGN_Mt090430 20090702
Length = 110
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 1098 NLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWTLPFELMCDASDHAVGAVLGQRK 1157
+ L K+ P ++ EC +AF+ +K L+ PI+ P P L D +VG VLGQR
Sbjct: 17 DCLSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRD 76
Query: 1158 D--KKLHVIYYASRTLNDAQLNYATTEKELLAI 1188
+ KK H IYY S+ D + Y EK A+
Sbjct: 77 ETGKKEHAIYYLSKKFTDCETRYTMLEKTCCAL 109
>IMGA|Medtr6g043530.1 Retrotransposon gag protein
chr06_pseudomolecule_IMGAG_V3 9095062-9092839 H
EGN_Mt090430 20090702
Length = 128
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 102 LPSEDPNAHITNFLEICDTFKQNGVSEDAIKLRLFPFTLRDKARSWLQSCPAGSFTTWDE 161
L SED NA++T+F+ + GV E +LRLF ++L + + WL + +G TWD+
Sbjct: 39 LESEDCNANLTHFMHSYNIINPAGVLESDKRLRLFGYSLTEWEKDWLDTLSSGMIETWDK 98
Query: 162 LAQKFLAKFFPSSK 175
L ++FL ++FP++K
Sbjct: 99 LKREFLDRYFPTAK 112
>IMGA|Medtr5g028970.1 hypothetical protein
chr05_pseudomolecule_IMGAG_V3 11987719-11990018 E
EGN_Mt090430 20090702
Length = 102
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 7/71 (9%)
Query: 620 RMSLQLADRSIKYPRGIVEDVLVKVGTFIFPVDFVILDIDEDREGSLILGRPFLATARAL 679
+++L+ R +KY +LV +GTF+F +D V+++I + EG LIL R FLAT RAL
Sbjct: 26 KVTLETFGRMVKY-------ILVIIGTFVFLIDVVVMEISDVEEGPLILRRSFLATFRAL 78
Query: 680 IDVYEGKLTLR 690
+DV +G + LR
Sbjct: 79 VDVEQGDVILR 89
>IMGA|AC233675_16.1 Retrotransposon gag protein AC233675.1
78601-79641 E EGN_Mt090430 20090702
Length = 346
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 74 TRPRVEANNFEIKPAIIQMLSTSIQYGGLPSEDPNAHITNFLEICDTFKQNGVSEDAIKL 133
T+P ++ +I P I + G P+E P H++ F ++C + N S ++
Sbjct: 121 TQPMNASSYIQIAPLPI--------FRGTPNESPITHLSRFNKVC---RANNASSVEMQK 169
Query: 134 RLFPFTLRDKARSW--LQSCPAGSFTTWDELAQKFLAKFFPSSKTTKLRNEIMTFAHHDQ 191
++FP TL +++ W L P +WDE+ FL ++ +LR+E+M ++
Sbjct: 170 KIFPVTLEEESALWYDLNIEPYYISLSWDEIKLSFLQAYYEIEPVEELRSELMGIHQGEK 229
Query: 192 ESLYEAWERFKDLLRKCPHHSLPKWLQVQTFYNAL 226
E + + R + +L++ P H L + F N L
Sbjct: 230 ERVRSYFLRLQWILKRWPEHGLEDDVIKGVFVNGL 264
>IMGA|Medtr4g109300.1 Retrotransposon gag protein
chr04_pseudomolecule_IMGAG_V3 24421886-24422926 E
EGN_Mt090430 20090702
Length = 346
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 74 TRPRVEANNFEIKPAIIQMLSTSIQYGGLPSEDPNAHITNFLEICDTFKQNGVSEDAIKL 133
T+P ++ +I P I + G P+E P H++ F ++C + N S ++
Sbjct: 121 TQPMNASSYIQIAPLPI--------FRGTPNESPITHLSRFNKVC---RANNASSVEMQK 169
Query: 134 RLFPFTLRDKARSW--LQSCPAGSFTTWDELAQKFLAKFFPSSKTTKLRNEIMTFAHHDQ 191
++FP TL +++ W L P +WDE+ FL ++ +LR+E+M ++
Sbjct: 170 KIFPVTLEEESALWYDLNIEPYYISLSWDEIKLSFLQAYYEIEPVEELRSELMGIHQGEK 229
Query: 192 ESLYEAWERFKDLLRKCPHHSLPKWLQVQTFYNAL 226
E + + R + +L++ P H L + F N L
Sbjct: 230 ERVRSYFLRLQWILKRWPEHGLEDDVIKGVFVNGL 264
>IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein AC233082.3 19216-16757 H
EGN_Mt090430 20090702
Length = 819
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 800 ILDLQGISPSVCM-HKILMEEDYKPSIEHQRRLNPNMKEVVKAEIIKLLDAGIIYPISDS 858
L G+ PS H I + + P R + K+ + I +L G I P S S
Sbjct: 707 FLKPHGLPPSRPHDHHIPLLPNTPPINVKPYRYPHSQKDAMTTLIRDMLQNGTIMP-STS 765
Query: 859 NWVSPVQVVPKKGGMTAISNENNELIPTRTVTGWRVCIDYRKLNKATRKDHFPLPFIDQM 918
+ SPV +V KK G WR C+DYR LN T KD FP+P ID++
Sbjct: 766 PFSSPVLLVRKKDGT------------------WRFCVDYRALNAVTVKDRFPIPTIDEL 807
Query: 919 LERLAG 924
L+ L
Sbjct: 808 LDELGA 813
>IMGA|Medtr7g040530.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 9943828-9944475 H
EGN_Mt090430 20090702
Length = 90
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 625 LADRSIKYPRGIVEDVLVKVGTFIFPVDFVILDIDEDREGSLILGRPFLATARALIDVYE 684
LAD S + GIV D VKV F FP D +++ + +E L+LGR L T++ALI V
Sbjct: 20 LADGSKSHIDGIVRDAQVKVDKFSFPTDMIVMKMINYQECPLLLGRSLLTTSQALIYVER 79
Query: 685 GKLTLR 690
GK+ +R
Sbjct: 80 GKIVIR 85
>IMGA|Medtr5g065540.1 hypothetical protein
chr05_pseudomolecule_IMGAG_V3 22936686-22938708 E
EGN_Mt090430 20090702
Length = 282
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%)
Query: 514 VFKKLQINIPFAEALAQMPSYAKFLKDILSKKRKIDDQGTVMLTEECSAIIQNKLPPKLK 573
V K+ ++ P E Q P FL+++L K + ++ + LT EC + +
Sbjct: 76 VLKQYKVIKPIKEMAEQSPCCIMFLQELLKKHVDLSEEELISLTSECHHTYEVLAEVRFD 135
Query: 574 DPGSFSIPCNIGNLDFEKALADLGASINLMSYEVFKMLGM 613
G F++P I D E+ L D GA+ NLMS + LG+
Sbjct: 136 GEGCFTLPIEINGDDIEQGLYDSGANANLMSLTKARELGI 175
>IMGA|Medtr2g077960.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 18098195-18097033 H
EGN_Mt090430 20090702
Length = 106
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 154 GSFTTWDELAQKFLAKFFPSSKTTKLRNEIMTFAHHDQESLYEAWERFK 202
+ TWD+L Q+FL +FFP++K R EI++F D E LY+A R+K
Sbjct: 58 ATIATWDDLKQEFLPRFFPTAKYLVKRKEIVSFQQEDGEYLYDASRRYK 106
>IMGA|Medtr4g047410.1 gag-pol polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 11043520-11043164 H
EGN_Mt090430 20090702
Length = 118
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%)
Query: 1084 RFIKDFSKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWTLPFELMCD 1143
RF+ ++ P NLL K+ F++ EC A LK L + P+++ PD L
Sbjct: 7 RFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLS 66
Query: 1144 ASDHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFA 1191
S AV L + Y+ S+ L + Y EK LA+V A
Sbjct: 67 VSSEAVSGTLNIETQEGQKPTYFTSKALLGPETRYQKIEKVALALVTA 114
>IMGA|Medtr4g047200.1 gag-pol polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 10908500-10908144 H
EGN_Mt090430 20090702
Length = 118
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%)
Query: 1084 RFIKDFSKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWTLPFELMCD 1143
RF+ ++ P NLL K+ F++ EC A LK L + P+++ PD L
Sbjct: 7 RFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLS 66
Query: 1144 ASDHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFA 1191
S AV L + Y+ S+ L + Y EK LA+V A
Sbjct: 67 VSSEAVSGTLNIETQEGQKPTYFTSKALLGPETRYQKIEKVALALVTA 114
>IMGA|Medtr4g155320.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 38316915-38317142 H
EGN_Mt090430 20090702
Length = 75
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 656 LDIDEDREGSLILGRPFLATARALIDVYEGKLTLRVGQEEIVFDVLKSCKLPMDYGDCFR 715
+DI ED LIL R F+ TAR +ID+ +GK +RV E F++ ++ K D G CF+
Sbjct: 1 MDIKEDDGAPLILRRQFMKTARMMIDMDDGKTKMRV---EDGFNLFEAMKHYEDNGVCFK 57
Query: 716 IDVVDECV 723
+D +DE +
Sbjct: 58 MDTIDESI 65
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 22/210 (10%)
Query: 1371 LESGLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEMP--LNSILEVEIFDIWGLDFMGPF 1428
+ S LY N+ D N V CD C +K+ +P +++ F++ LD GP
Sbjct: 481 MMSSLY-SNIVSDNKNSV--CDICH----FAKQKHLPFSISTSHATSNFELLHLDIWGPL 533
Query: 1429 PPS--YSNQYILVAVDYVSKWAEAVALPNNDAKS--VMSFIKKNIFTRHGTPRAIITDGG 1484
S + ++Y L VD S++ ++L S V SFIK H TP+ I +D G
Sbjct: 534 SISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQFHVTPKCIRSDNG 593
Query: 1485 KHFCNKYLDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKKILETTVGQSR---KDWSK 1541
F + S G+ H+ PQ +G+VE + I + + QS+ WS
Sbjct: 594 PEF---LILSFYESLGILHQKSCVETPQQNGRVERKHHHILNVGRALLYQSKLPASYWSY 650
Query: 1542 KLDDALWAYRTAFKTPI--GMSPYRMVYGK 1569
L A++ TP+ G SPY ++ K
Sbjct: 651 ALLHAVFLINRK-PTPLLEGQSPYYALHHK 679
>IMGA|Medtr1g037440.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 8790077-8790274 H
EGN_Mt090430 20090702
Length = 65
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 406 NHKIQQAAIRNLEIQLGQFANMMASRPQGTLPSNTEKNPKEQVQAITLR 454
N K A+I+NLE+++GQ +AS +GTL +NT+ NPKEQ AI ++
Sbjct: 7 NQKNIDASIKNLEVEMGQLVKQLASNHKGTLTANTKHNPKEQCNAINVK 55
>IMGA|Medtr2g116920.1 Enzymatic polyprotein, putative
chr02_pseudomolecule_IMGAG_V3 27381410-27382276 H
EGN_Mt090430 20090702
Length = 288
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 1146 DHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDKFRAYLIGAKTI 1205
D++ +L + ++KLH+ Y S T D + Y E E LA V +K++ L+ ++ +
Sbjct: 170 DYSASKILI-KDNEKLHLCKYISGTFTDTESRYHIQELETLACVKILEKWKVELLPSRFL 228
Query: 1206 VYTDH----SAIKYLLEKKDAKPRLIRWVLLLQEFDLEIRDKKGTENLVADHLSR 1256
+ D S KY ++ + RLIRW + LQ F I+ K +N AD L+R
Sbjct: 229 LRIDSKYLTSFWKYKIKADHRQDRLIRWQMKLQSFQPYIQYIKSEQNSFADTLTR 283
>IMGA|AC137826_3.1 Polynucleotidyl transferase, Ribonuclease H fold
AC137826.21 8552-8028 H EGN_Mt090430 20090702
Length = 174
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 1505 VGTPYHPQTSGQVEVTNREIKKILETTVGQSRKDWSKKLDDALWAYRTAFKTPIGMSPYR 1564
+ T YHPQT GQ+E N+ +++ L + + +W + L A + Y + F+T GM P++
Sbjct: 1 MSTAYHPQTDGQLEALNKCVEQYLHCFLAEHPHEWVRMLLWAEFLYTSTFQTSSGMRPFQ 60
Query: 1565 MVYGK 1569
++G+
Sbjct: 61 ALFGR 65
>IMGA|Medtr5g039360.1 hypothetical protein
chr05_pseudomolecule_IMGAG_V3 16663955-16664365 H
EGN_Mt090430 20090702
Length = 136
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 618 PTRMSLQLADRSIKYPRGIVEDVLVKVGTFIFPVDFVILDIDEDREGSLILGRPFLATAR 677
PT L++ADR+ + P G+V +V V + F F D V++DI + + LGRPFLA A+
Sbjct: 2 PTEKLLRVADRTKEEPEGVVLNVKVAIEDFEFLADIVVMDI---HDCPVTLGRPFLAIAQ 58
Query: 678 ALIDVYEGKLTLRVGQEEIVFDVLKSCKLPMDYG-DCFRIDVVD 720
A I + ++ L+ + ++ + + + D G +C ++ VD
Sbjct: 59 ARIKLEYKEIVLKARGKYLIHQISQD-NIRKDAGTECHTVEDVD 101
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 1369 RILESGLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEMPL-NSILEVEI-FDIWGLDFMG 1426
R++ +P L D + CD C +K+ ++P NSI I F++ D G
Sbjct: 503 RLIHMSQLYPTLTVDVH---ATCDICH----FAKQKKLPFSNSISVASIKFELLHFDIWG 555
Query: 1427 PFPPS--YSNQYILVAVDYVSKWAEAVALPNND--AKSVMSFIKKNIFTRHGTPRAIITD 1482
P + ++++Y L +D S++ V L + ++ V +FI + TP+ + +D
Sbjct: 556 PLSITSIHNHRYFLTILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVRSD 615
Query: 1483 GGKHFCNKYLDSLLAKYGVTHRVGTPYHPQTSGQVEVTNREIKKILETTVGQSR---KDW 1539
G F L S A G+ H PQ +G+VE ++ I + + QS+ W
Sbjct: 616 NGPEFL---LHSFYASKGIVHHRSCVETPQQNGRVERKHQHILNVGRALLYQSKLPVSYW 672
Query: 1540 SKKLDDALWAY-RTAFKTPIGMSPYRMVYGKACHLPVELEHKAFWAIQF 1587
S L A + R T SPY++++ +P E K F ++ +
Sbjct: 673 SYALLHATFIINRVTSPTLHNKSPYQLLHDT---IPAEHIFKVFGSLCY 718