Jatropha Genome Database

JcCB0049771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0049771.10 - phase: 0 
         (202 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g121190.1 hypothetical protein chr04_pseudomolecule_I...    88   2e-18
IMGA|Medtr3g113590.1 Major intrinsic protein chr03_pseudomolecul...    50   6e-07

>IMGA|Medtr4g121190.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 28314666-28329549 E
           EGN_Mt090430 20090702
          Length = 722

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 66/134 (49%), Gaps = 7/134 (5%)

Query: 68  RWDAAFHGVIESAKKRIDSLINPRRKEVEVGAVGDRESGKGDKVXXXXXXXXXXXXXXXX 127
           RWD+     +  A K+ DS +N  R        G   + +G  V                
Sbjct: 66  RWDSVLQEFVTGAIKQFDSYLNLLRG-------GSAAAKEGSDVHDDDWDWNRWRHYFDQ 118

Query: 128 VDEQERIVSVLKSQLNHAVNREDYEXXXXXXXXXXXXXTNDSVGTVMSQLNRAVTEEHYK 187
           VD+QER++ +LKSQL HAV  EDYE              NDSVG V + L RA+ EE Y 
Sbjct: 119 VDDQERLLIILKSQLRHAVYVEDYEEAAKLKVAIAAAANNDSVGKVKTLLKRAIKEERYN 178

Query: 188 DAAFLRDNAGAGLV 201
           DAAFLRD AGAGLV
Sbjct: 179 DAAFLRDKAGAGLV 192


>IMGA|Medtr3g113590.1 Major intrinsic protein
           chr03_pseudomolecule_IMGAG_V3 28558988-28564861 E
           EGN_Mt090430 20090702
          Length = 630

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%)

Query: 128 VDEQERIVSVLKSQLNHAVNREDYEXXXXXXXXXXXXXTNDSVGTVMSQLNRAVTEEHYK 187
           +++ E   S+LK QL  A+ +E+++             + DSV  +MSQL  A+ +E Y 
Sbjct: 82  IEQAESFASLLKFQLEDAIEKEEFQEAAKLKRAIVEATSKDSVAEIMSQLKNAIDDERYH 141

Query: 188 DAAFLRDNAGAGLV 201
           DA+ L    G+GLV
Sbjct: 142 DASKLCRYTGSGLV 155