Jatropha Genome Database

JcCB0049611.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0049611.20 - phase: 0 /partial/short
         (45 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g013610.1 hypothetical protein chr06_pseudomolecule_I...    62   1e-10

>IMGA|Medtr6g013610.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 2948517-2944179 E
           EGN_Mt090430 20090702
          Length = 398

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 1   MADDLVTFDGGYQMTLLPGGMYMGYPSDIAKNKAEPLSLMLSL 43
           ++D+LVTFDGGYQM LLPGGMYMG P D+AK+ A+  S  L  
Sbjct: 323 ISDNLVTFDGGYQMILLPGGMYMGCPCDVAKSVAQSKSFHLEF 365