Jatropha Genome Database

JcCB0047491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0047491.10 + phase: 0 /partial
         (153 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g025200.1 Mitochondrial inner membrane protease atp23...   172   5e-44
IMGA|Medtr8g025170.1 hypothetical protein chr08_pseudomolecule_I...    68   1e-12

>IMGA|Medtr8g025200.1 Mitochondrial inner membrane protease atp23,
           related chr08_pseudomolecule_IMGAG_V3 4981758-4981217 E
           EGN_Mt090430 20090702
          Length = 166

 Score =  172 bits (437), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 105/154 (68%), Gaps = 14/154 (9%)

Query: 1   LREHLEKAGCGVEENLIKAINCDXXXXXXXXXXXXXXVCSNHMNIQDEVNQVVIHELIHA 60
           LREH+EKAGC V++   K I C                             V+IHELIHA
Sbjct: 26  LREHMEKAGCPVKDTFFKVIYCRNKYGGSYAPGGGGI-------------SVIIHELIHA 72

Query: 61  YDDCRAKNLDWANCAHHACSEIRASHLSGDCHYKRELLRGYMKMRGHGQECVKRRAMKSV 120
           +DDC A N++W NCAHHACSEIRA+ LSGDCH+KRELLRG +K+RGH  EC+K+R +KS+
Sbjct: 73  FDDCGAANVNWRNCAHHACSEIRANRLSGDCHFKRELLRGILKIRGHEPECIKKRVLKSL 132

Query: 121 IANPYC-SEAAAKDAVEAVWDVCYNDTKPFDRAP 153
            +NP+C +   +KD++EAVW++CYNDT PFD+AP
Sbjct: 133 SSNPFCAASTTSKDSMEAVWNICYNDTAPFDKAP 166


>IMGA|Medtr8g025170.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 4971553-4971211 E
           EGN_Mt090430 20090702
          Length = 98

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 45  IQDEVNQVVIHELIHA--YDDCRAKNLDWANCAHHACSEIRASHLSGDCHYKRELLRGYM 102
           I+D+    +I  L H   Y     +NL+W NC HH CSEIR + LS DCH+KRELLRG +
Sbjct: 25  IKDKFFNAMIFALNHGGMYIPGGGENLNWTNCVHHVCSEIRVNRLSSDCHFKRELLRGIL 84

Query: 103 KMRGHGQECVK 113
           K+    Q   K
Sbjct: 85  KIPDTNQNASK 95