Jatropha Genome Database
- JcCB0045901.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0045901.20 - phase: 2 /partial
(209 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr7g118010.1 Helix-loop-helix DNA-binding chr07_pseudomo... 122 2e-28
IMGA|Medtr1g103000.1 Helix-loop-helix DNA-binding chr01_pseudomo... 74 5e-14
IMGA|Medtr7g134730.1 Helix-loop-helix DNA-binding chr07_pseudomo... 74 5e-14
IMGA|Medtr5g016950.1 Helix-loop-helix DNA-binding chr05_pseudomo... 69 1e-12
IMGA|Medtr1g024210.1 Helix-loop-helix DNA-binding chr01_pseudomo... 67 5e-12
IMGA|Medtr7g134210.1 Helix-loop-helix DNA-binding chr07_pseudomo... 64 4e-11
IMGA|Medtr8g145720.2 Helix-loop-helix DNA-binding chr08_pseudomo... 57 8e-09
IMGA|Medtr8g145720.1 Helix-loop-helix DNA-binding chr08_pseudomo... 57 8e-09
IMGA|Medtr5g041500.1 Helix-loop-helix DNA-binding chr05_pseudomo... 56 1e-08
>IMGA|Medtr7g118010.1 Helix-loop-helix DNA-binding
chr07_pseudomolecule_IMGAG_V3 27689442-27693888 E
EGN_Mt090430 20090702
Length = 521
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 104/206 (50%), Gaps = 19/206 (9%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQXXXXXXXXXX------XXFSG 54
INEKM+ALQ IPR NKSDKASMLDEAI+YLKSLQLQVQ F G
Sbjct: 274 INEKMKALQELIPRSNKSDKASMLDEAIDYLKSLQLQVQRVQLMQMMSMGCGMVPMMFPG 333
Query: 55 IQQYXXXXXXXXXXXXXXXXXXNRPMMPFPNVXXXXXXXXXXXXXXXXXRFPMPAFHMPP 114
IQQY NRP+MPFPN+ RF MP FHMP
Sbjct: 334 IQQY--MPTVGMGMGMGMEMGINRPVMPFPNM---LSGSALPAAANLGPRFAMPPFHMPH 388
Query: 115 VPTPGPDPSRIQAANQSD-PMLSAISAQTSHQPGVPSFADXXXXXXXXXXXXXXVSQNQV 173
VPTPG SR+QAANQ D ++++ S+Q P+F+D + QNQ
Sbjct: 389 VPTPG--SSRMQAANQVDNNVITSAGTHDSNQSRTPNFSDSYQQYLGPHQMQFQLMQNQA 446
Query: 174 MTRPSTSKPGTNQGPENVDNHQSGRL 199
M +P+ S+P E + QSG+L
Sbjct: 447 MNQPNVSRP-----LEKPETRQSGKL 467
>IMGA|Medtr1g103000.1 Helix-loop-helix DNA-binding
chr01_pseudomolecule_IMGAG_V3 21335912-21331478 E
EGN_Mt090430 20090702
Length = 721
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKMRALQ IP CNK DKASMLDEAIEYLK+LQLQVQ
Sbjct: 484 INEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQ 522
>IMGA|Medtr7g134730.1 Helix-loop-helix DNA-binding
chr07_pseudomolecule_IMGAG_V3 31900725-31897291 E
EGN_Mt090430 20090702
Length = 682
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 36/39 (92%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE+MRALQ IP CNK+DKASMLDEAIEYLKSLQLQ+Q
Sbjct: 445 INERMRALQELIPNCNKADKASMLDEAIEYLKSLQLQLQ 483
>IMGA|Medtr5g016950.1 Helix-loop-helix DNA-binding
chr05_pseudomolecule_IMGAG_V3 6037873-6040692 E
EGN_Mt090430 20090702
Length = 344
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKM+ALQ+ IP NK+DKASMLDEAIEYLK LQLQVQ
Sbjct: 127 INEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 165
>IMGA|Medtr1g024210.1 Helix-loop-helix DNA-binding
chr01_pseudomolecule_IMGAG_V3 5662294-5664363 H
EGN_Mt090430 20090702
Length = 267
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEK++ALQ+ IP NK+DKASMLDEAIEYLK LQLQVQ
Sbjct: 107 INEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 145
>IMGA|Medtr7g134210.1 Helix-loop-helix DNA-binding
chr07_pseudomolecule_IMGAG_V3 31626898-31629047 E
EGN_Mt090430 20090702
Length = 373
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEK+RAL+ IP CNK DKASMLD+AI+YLK+L+LQ+Q
Sbjct: 224 INEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQ 262
>IMGA|Medtr8g145720.2 Helix-loop-helix DNA-binding
chr08_pseudomolecule_IMGAG_V3 35494532-35490796 E
EGN_Mt090430 20090702
Length = 400
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ALQ +P NK+DKASMLDE I+Y+K LQ+QV+
Sbjct: 218 IAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVK 256
>IMGA|Medtr8g145720.1 Helix-loop-helix DNA-binding
chr08_pseudomolecule_IMGAG_V3 35494532-35490796 E
EGN_Mt090430 20090702
Length = 403
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ALQ +P NK+DKASMLDE I+Y+K LQ+QV+
Sbjct: 221 IAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVK 259
>IMGA|Medtr5g041500.1 Helix-loop-helix DNA-binding
chr05_pseudomolecule_IMGAG_V3 17756948-17764063 E
EGN_Mt090430 20090702
Length = 492
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQV 38
IN++M+ LQ +P +K+DKASMLDE IEYLK LQ QV
Sbjct: 319 INQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQV 356