Jatropha Genome Database

JcCB0045441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045441.10 - phase: 2 /pseudo/partial
         (654 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g012630.1 hAT-like transposase, related chr05_pseudom...    51   2e-06
IMGA|Medtr4g156670.1 Putative AC transposase, chr04_pseudomolecu...    49   8e-06

>IMGA|Medtr5g012630.1 hAT-like transposase, related
           chr05_pseudomolecule_IMGAG_V3 3679465-3680136 H
           EGN_Mt090430 20090702
          Length = 223

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 354 NWEICAKILDILKIFNDATYKFSGVYYPTSNLFLPMCINIVTALQKFQNDD--LLKDCIF 411
            WE   K+  +L++FN  T   SG  YPTSNL+L     I   L +   D+   +KD   
Sbjct: 30  EWEKVEKVCKLLEVFNSVTNIISGSEYPTSNLYLAEVFQIKQVLDQVVQDESNFMKDMAN 89

Query: 412 SMKKKXLSYFKNIPPLYLVAIVFDPRRRM 440
           +MK+K   Y+     +  +A V DPR +M
Sbjct: 90  AMKEKFDKYWGQCNLVMSLASVLDPRIKM 118


>IMGA|Medtr4g156670.1 Putative AC transposase,
           chr04_pseudomolecule_IMGAG_V3 38872363-38871956 H
           EGN_Mt090430 20090702
          Length = 135

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 353 QNWEICAKILDILKIFNDATYKFSGVYYPTSNLFLPMCINIVTALQKFQ--NDDLLKDCI 410
           ++W++  +I + LK+F   T  FSG  YPTSN + P    I   L+++Q    D +++  
Sbjct: 29  KDWKVAREICEHLKLFFSVTELFSGTKYPTSNHYFPKICEIRLTLREWQISCSDTIRNMA 88

Query: 411 FSMKKKXLSYFKNIPPLYLVAIVFDPRRRMDVLCDYLTIYY 451
             M  K   Y+  I  +  +  V DPR +M +L  +  + Y
Sbjct: 89  GDMIVKFDKYWGLINGVMAIGAVLDPRYKMQLLNYFFPLIY 129