Jatropha Genome Database

JcCB0045301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045301.20 + phase: 2 /pseudo/partial
         (106 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g088330.1 Cecropin; Cytochrome P450 chr08_pseudomolec...    66   4e-12
IMGA|Medtr8g088320.1 Cecropin; Cytochrome P450 chr08_pseudomolec...    66   4e-12
IMGA|Medtr8g090460.1 Cecropin; Cytochrome P450 chr08_pseudomolec...    64   2e-11

>IMGA|Medtr8g088330.1 Cecropin; Cytochrome P450
           chr08_pseudomolecule_IMGAG_V3 18682973-18680887 E
           EGN_Mt090430 20090702
          Length = 531

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 54  PWPVMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITASD 106
           PWP++GN+PEM+  RPTFRW+ + M ++ TDI  IRLG  +VI ++ P  A +
Sbjct: 50  PWPIVGNLPEMLANRPTFRWIQKMMNDLNTDIACIRLGNVHVITISDPEIARE 102


>IMGA|Medtr8g088320.1 Cecropin; Cytochrome P450
           chr08_pseudomolecule_IMGAG_V3 18677148-18675387 H
           EGN_Mt090430 20090702
          Length = 527

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 54  PWPVMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITASD 106
           PWP++GN+PEM+  RPTFRW+ + M ++ TDI  IRLG  +VI ++ P  A +
Sbjct: 46  PWPIVGNLPEMLANRPTFRWIQKMMNDLNTDIACIRLGNVHVITISDPEIARE 98


>IMGA|Medtr8g090460.1 Cecropin; Cytochrome P450
           chr08_pseudomolecule_IMGAG_V3 19759512-19757522 E
           EGN_Mt090430 20090702
          Length = 495

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 37/52 (71%)

Query: 55  WPVMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITASD 106
           WP++GN+PEM+  RPTFRW+ + M ++ TDI  IRLG  +VI ++ P  A +
Sbjct: 51  WPIVGNLPEMLANRPTFRWIQKMMNDLNTDIACIRLGNVHVITISDPEIARE 102