Jatropha Genome Database

JcCB0045051.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045051.10 + phase: 0 /partial
         (143 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g094520.1 2Fe-2S ferredoxin, iron-sulfur binding site...   166   3e-42
IMGA|Medtr5g094490.1 2Fe-2S ferredoxin, iron-sulfur binding site...   161   1e-40
IMGA|Medtr3g122600.1 [2Fe-2S]-binding; 2Fe-2S Ferredoxin-like fo...    95   1e-20
IMGA|Medtr2g117560.1 2Fe-2S ferredoxin, iron-sulfur binding site...    60   3e-10
IMGA|Medtr5g094530.1 hypothetical protein chr05_pseudomolecule_I...    51   3e-07

>IMGA|Medtr5g094520.1 2Fe-2S ferredoxin, iron-sulfur binding site;
           Xanthine dehydrogenase, small subunit; Carbon-monoxide
           dehydrogenase, large subunit
           chr05_pseudomolecule_IMGAG_V3 37404021-37397275 E
           EGN_Mt090430 20090702
          Length = 1320

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 99/138 (71%)

Query: 5   RETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXXXXSK 64
           +++ N+ SL+F VNG++FELS VDPSTTLLEFLRTQT FKS                 SK
Sbjct: 4   KKSENQTSLIFCVNGEKFELSKVDPSTTLLEFLRTQTQFKSVKLGCGEGGCGACVVLISK 63

Query: 65  YNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQCGFCT 124
           Y+P+LD+VED            I+  S+TTSEG+GNSK GFHSIH+RF+GFHASQCGFCT
Sbjct: 64  YDPLLDRVEDFTASSCLTLLCSIHGCSVTTSEGIGNSKKGFHSIHERFAGFHASQCGFCT 123

Query: 125 PGMCMSLFGALVKAEKTD 142
           PGM +SLFGALV A+K++
Sbjct: 124 PGMSVSLFGALVNADKSN 141


>IMGA|Medtr5g094490.1 2Fe-2S ferredoxin, iron-sulfur binding site;
           Xanthine dehydrogenase, small subunit; Carbon-monoxide
           dehydrogenase, large subunit
           chr05_pseudomolecule_IMGAG_V3 37388580-37380627 H
           EGN_Mt090430 20090702
          Length = 1356

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 91/135 (67%)

Query: 6   ETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXXXXSKY 65
           E     SL+F VNG++FELS VDPSTTL+EFLRTQT FKS                 SKY
Sbjct: 7   EKNQTTSLIFCVNGEKFELSKVDPSTTLIEFLRTQTRFKSVKLGCGEGGCGACVVLISKY 66

Query: 66  NPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQCGFCTP 125
           +P++D+VED            I+  SITTSEG+GNSK G H IH+RF+GFHASQCGFCTP
Sbjct: 67  DPLVDRVEDFTANSCLTLLCSIHGCSITTSEGIGNSKQGLHPIHERFAGFHASQCGFCTP 126

Query: 126 GMCMSLFGALVKAEK 140
           GMC+SLFG LV AEK
Sbjct: 127 GMCVSLFGTLVNAEK 141


>IMGA|Medtr3g122600.1 [2Fe-2S]-binding; 2Fe-2S Ferredoxin-like fold
           chr03_pseudomolecule_IMGAG_V3 30527670-30526647 E
           EGN_Mt090430 20090702
          Length = 218

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 49/66 (74%)

Query: 63  SKYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQCGF 122
           SKY+P+L++VED            IN  SITTS+G+GNSK GFH  H+RFSGFHASQCGF
Sbjct: 77  SKYDPLLNRVEDFTASSCLTLLCSINGCSITTSDGIGNSKQGFHPSHERFSGFHASQCGF 136

Query: 123 CTPGMC 128
           CTPGMC
Sbjct: 137 CTPGMC 142


>IMGA|Medtr2g117560.1 2Fe-2S ferredoxin, iron-sulfur binding site;
           Xanthine dehydrogenase, small subunit; Carbon-monoxide
           dehydrogenase, large subunit
           chr02_pseudomolecule_IMGAG_V3 27646570-27659065 E
           EGN_Mt090430 20090702
          Length = 1358

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 4   ERETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXXXXS 63
           ER+  N + +++ VNG R  L       TLLE+LR  T  K                  S
Sbjct: 11  ERDLKNDSPILY-VNGIRRVLPHDLAHFTLLEYLRGLTGTK---LGCGEGGCGACTVMVS 66

Query: 64  KYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQCGFC 123
            Y+  L +               +    + T EGLG+ + G H I +  +  H SQCGFC
Sbjct: 67  HYDTNLRKTLHYAINACLAPLYSVEGMHVITVEGLGSCRLGLHPIQESLARTHGSQCGFC 126

Query: 124 TPGMCMSLFGALVKAEKT 141
           TPG  MS++ AL+++ +T
Sbjct: 127 TPGFVMSMY-ALLRSSQT 143


>IMGA|Medtr5g094530.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 37409740-37408217 H
          EGN_Mt090430 20090702
          Length = 59

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 26/32 (81%)

Query: 13 LVFAVNGKRFELSSVDPSTTLLEFLRTQTSFK 44
          L+F VNG +FELS+VDPS  LLEFL TQT FK
Sbjct: 23 LIFCVNGDKFELSNVDPSLPLLEFLHTQTQFK 54