Jatropha Genome Database

JcCB0044401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0044401.20 - phase: 0 /partial
         (61 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g024430.1 hypothetical protein chr02_pseudomolecule_I...    58   1e-09
IMGA|Medtr4g154880.1 ZIM chr04_pseudomolecule_IMGAG_V3 38122104-...    46   5e-06

>IMGA|Medtr2g024430.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 6181975-6180463 E
           EGN_Mt090430 20090702
          Length = 134

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 1   MEEKLKSPVGTPTCSSETASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPYNH 59
           ++EK+ +P+G+   +  T  Q  P QL  P  GLSMKRS+QRFLQKR +R+   SPY H
Sbjct: 77  VQEKVMTPIGSEPSTPTTIVQS-PHQLYSPGPGLSMKRSLQRFLQKRKNRVQEASPYYH 134


>IMGA|Medtr4g154880.1 ZIM chr04_pseudomolecule_IMGAG_V3
           38122104-38123465 E EGN_Mt090430 20090702
          Length = 118

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 15/60 (25%)

Query: 1   MEEKLKSPVGT-PTCSSETASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPYNH 59
           ++EK+K+P G+ PT          P Q     +GLSMKRS+QRFLQKR +R+   SPY H
Sbjct: 73  LQEKVKTPRGSEPTT---------PVQ-----SGLSMKRSLQRFLQKRKNRVQEASPYLH 118