Jatropha Genome Database

JcCB0041791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041791.10 + phase: 0 /pseudo/partial
         (296 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC146557_13.1 Winged helix repressor DNA-binding AC146557.3...   307   5e-84
IMGA|Medtr3g156310.1 Transcription factor E2F/dimerisation partn...   102   2e-22

>IMGA|AC146557_13.1 Winged helix repressor DNA-binding AC146557.33
           75654-81329 F EGN_Mt090430 20090702
          Length = 460

 Score =  307 bits (786), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 159/229 (69%), Positives = 178/229 (77%), Gaps = 5/229 (2%)

Query: 69  QIRXTNKMQERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPD 128
           QIR   +MQERLR+LSEDENN+K+LFVTEEDIK+LP  QNETLIAIKAPHGTTLEVPDPD
Sbjct: 236 QIR---EMQERLRNLSEDENNEKFLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPD 292

Query: 129 EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIQGVEPPPNYPSSSGFNE-NMDTTM 187
           EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEI GV+    +P S   N+ N D + 
Sbjct: 293 EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVASKFPPSPEVNKVNKDQST 352

Query: 188 IPGESRGKEIEMQGQDSNRMCSDLTTSQDFVSGLMKIVPSEVDSDADYWLLSDADVSITD 247
           +  E +GKEIE+Q QD     SDL  + DFVSG+MKIVPS+V SDADYWLLSDADVSITD
Sbjct: 353 VVPEDKGKEIEVQRQDGEGPSSDLNNNHDFVSGIMKIVPSDVASDADYWLLSDADVSITD 412

Query: 248 MWRTEPGVEWNEFGTLQDDYGMANVSTPQPQTPPLNPAEVPPNANTTAG 296
           MWRTEPGVEWNE   LQ++Y MA   +  P     N  EVP  +N T G
Sbjct: 413 MWRTEPGVEWNELEALQEEYCMAREQSTTPNHAS-NIGEVPSASNPTVG 460


>IMGA|Medtr3g156310.1 Transcription factor E2F/dimerisation partner
           (TDP) chr03_pseudomolecule_IMGAG_V3 40970794-40965713 E
           EGN_Mt090430 20090702
          Length = 390

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 72/108 (66%)

Query: 77  QERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPDEAVDYPQR 136
           +E +R+L E EN  K+LF T+EDI +LP  QN+ LI IKAP  + +EVPDPDE + + QR
Sbjct: 205 KELIRNLEEGENTGKYLFFTKEDILTLPCFQNKQLITIKAPKASFIEVPDPDEELGFHQR 264

Query: 137 RYRIVLRSTMGPIDVYLVSQFEEKFEEIQGVEPPPNYPSSSGFNENMD 184
           +YR+++RS  GPI++YL+++ + KFE +   +     PS +     MD
Sbjct: 265 QYRMIVRSATGPINLYLLNKHDHKFEGVSAKQAKLEDPSRNSNGCRMD 312