Jatropha Genome Database

JcCB0041771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041771.10 + phase: 0 
         (168 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing su...   258   9e-70
IMGA|Medtr5g089200.1 Leucine-rich repeat 2 chr05_pseudomolecule_...   244   1e-65
IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing su...   154   3e-38
IMGA|Medtr7g096650.1 Cyclin-like F-box chr07_pseudomolecule_IMGA...   137   3e-33
IMGA|Medtr4g124940.1 Cyclin-like F-box chr04_pseudomolecule_IMGA...   136   5e-33
IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related ch...   129   5e-31
IMGA|Medtr5g074580.1 Leucine-rich repeat 2 chr05_pseudomolecule_...   123   4e-29
IMGA|Medtr5g093700.1 Protein AUXIN SIGNALING F-BOX 3, putative c...    82   1e-16

>IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing
           subtype chr03_pseudomolecule_IMGAG_V3 22073407-22070105
           E EGN_Mt090430 20090702
          Length = 601

 Score =  258 bits (659), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 121/167 (72%), Positives = 144/167 (86%), Gaps = 4/167 (2%)

Query: 1   MEEESQDSKLNRMSCSSGMPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITI 60
           M EE ++ +LN     + + DVVL+CV+PYI DP+DRDAVS VCRRW+ELD++TRKH+TI
Sbjct: 1   MAEEDRNVRLN----GNRIIDVVLDCVIPYITDPKDRDAVSQVCRRWHELDSMTRKHVTI 56

Query: 61  ALCYTTSPDRLRRRFKHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSV 120
           ALCYTT+P RLRRRF HLESLKLKGKPRAAMFNLIPEDWGG VTPW+NEI+  FDCLK++
Sbjct: 57  ALCYTTTPWRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWINEISQYFDCLKNL 116

Query: 121 HFRRMIVKDSDLELLAKSRGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
           HFRRMIV+DSDL +LA+SRG VLQ LKL+KCSGFST GL ++GR CR
Sbjct: 117 HFRRMIVQDSDLNILAESRGHVLQSLKLEKCSGFSTKGLGYIGRFCR 163


>IMGA|Medtr5g089200.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 34621888-34616774 E
           EGN_Mt090430 20090702
          Length = 587

 Score =  244 bits (624), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 128/149 (85%)

Query: 19  MPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRFKHL 78
           + DVVL+CVMPYI DP+DRDAVS VCRRWYE+D+ TRKH+TIALCYTT+PDRLRRRF HL
Sbjct: 5   LSDVVLDCVMPYIHDPKDRDAVSQVCRRWYEIDSQTRKHVTIALCYTTTPDRLRRRFPHL 64

Query: 79  ESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELLAKS 138
           ESLKLKGKPRAAMFNLIPE+WGGFV PWV EI + FDCLKS+HFRRMIV D DL +LA+S
Sbjct: 65  ESLKLKGKPRAAMFNLIPENWGGFVNPWVREIENYFDCLKSLHFRRMIVTDDDLSILARS 124

Query: 139 RGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
           R + L  LKL+KCSGFST GL H+   C+
Sbjct: 125 RHQSLYSLKLEKCSGFSTHGLYHISHSCK 153


>IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing
           subtype chr08_pseudomolecule_IMGAG_V3 14712347-14710032
           H EGN_Mt090430 20090702
          Length = 557

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 107/151 (70%), Gaps = 4/151 (2%)

Query: 16  SSGMPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRF 75
           ++ +PDVV+E +M  +DD   R+   L  R W ++D+ TRKHITI L Y ++P++L++RF
Sbjct: 10  NASIPDVVVEHIMHNMDDFELRN---LFLREWRDMDSDTRKHITIPLIYASTPEKLKKRF 66

Query: 76  KHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELL 135
             L+SLKLKGKPRAA   +IPE+WGG+V+PW+  I +  +CL S+HF+RMIV D DL +L
Sbjct: 67  PKLQSLKLKGKPRAAKCGIIPENWGGYVSPWIKVIQNYDNCLNSLHFKRMIVSDHDLLIL 126

Query: 136 AKSRGRVLQVLKLDKCSGFSTDGLLHVGRLC 166
           A+ RG  L  L LD CSGF+T GL  + R C
Sbjct: 127 AE-RGGSLFSLVLDDCSGFTTKGLEDICRSC 156


>IMGA|Medtr7g096650.1 Cyclin-like F-box
           chr07_pseudomolecule_IMGAG_V3 21663069-21659617 E
           EGN_Mt090430 20090702
          Length = 571

 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 93/149 (62%), Gaps = 1/149 (0%)

Query: 19  MPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRFKHL 78
            PD V+E V  Y+    DR+++SLVC+ WY ++  TR+ + I  CY+ SP+RL  RF  L
Sbjct: 4   FPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERFPDL 63

Query: 79  ESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELLAKS 138
           +SL LKGKP  A F+L+P  WGGFV PW+  +A +   L+ +  +RM+V D  LELL++S
Sbjct: 64  KSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELLSRS 123

Query: 139 RGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
                + L L  C GF+TDGL  V   CR
Sbjct: 124 FVN-FKSLVLVSCEGFTTDGLAAVAANCR 151


>IMGA|Medtr4g124940.1 Cyclin-like F-box
           chr04_pseudomolecule_IMGAG_V3 29352485-29348732 F
           EGN_Mt090430 20090702
          Length = 586

 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 98/166 (59%), Gaps = 1/166 (0%)

Query: 2   EEESQDSKLNRMSCSSGMPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIA 61
           ++ESQ  K N M  +S  PD VLE V+  +   +DR +VSLVC+ WY  +  +R+++ I 
Sbjct: 7   KKESQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIG 66

Query: 62  LCYTTSPDRLRRRFKHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVH 121
            CY  SP+ L RRF ++ S+ +KGKPR + FNL+P +WG  +  W+   AD +  L+ + 
Sbjct: 67  NCYAVSPEILTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELR 126

Query: 122 FRRMIVKDSDLELLAKSRGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
            +RM V D  LE LA S     + L L  C GFSTDGL  V   C+
Sbjct: 127 LKRMAVSDESLEFLAFSFPN-FKALSLLSCDGFSTDGLAAVATNCK 171


>IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related
           chr03_pseudomolecule_IMGAG_V3 38779268-38775322 E
           EGN_Mt090430 20090702
          Length = 594

 Score =  129 bits (325), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 88/148 (59%), Gaps = 1/148 (0%)

Query: 21  DVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRFKHLES 80
           ++VLE V+ ++   RDR+A SLVC+ WY  +ALTR  + I  CY+ SP R   RF  + S
Sbjct: 23  EIVLETVLHFLTSRRDRNAASLVCKSWYRTEALTRSDLFIGNCYSVSPRRATSRFSRIRS 82

Query: 81  LKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELLAKSRG 140
           + +KGKPR A F+++P DWG   +PWV   A ++  L+  H +RM V D DL LLA S  
Sbjct: 83  VTIKGKPRFADFDMMPVDWGAHFSPWVTTFAAAYPWLEKFHLKRMSVTDDDLSLLADSFV 142

Query: 141 RVLQVLKLDKCSGFSTDGLLHVGRLCRY 168
              + L L  C GF T GL  V   CR+
Sbjct: 143 G-FKELVLVCCEGFGTPGLAAVASKCRF 169


>IMGA|Medtr5g074580.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 26963413-26966403 E
           EGN_Mt090430 20090702
          Length = 617

 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 15/178 (8%)

Query: 4   ESQDSKLNRMSCSSGMP--------------DVVLECVMPYIDDPRDRDAVSLVCRRWYE 49
           ES  S  NR   S   P              + VLE V+ ++   +DR++ SLVCR WY 
Sbjct: 22  ESSTSNRNRTGSSQPYPGSTENPSPFPDQVLENVLENVLHFLTSRKDRNSASLVCRSWYR 81

Query: 50  LDALTRKHITIALCYTTSPDRLRRRFKHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNE 109
            +ALTR  + I  CY  SP R   RF  ++S+ +KGKPR A F+L+P DWG    PW  E
Sbjct: 82  AEALTRSDLFIGNCYALSPRRAVARFSRIKSVTVKGKPRFADFDLMPVDWGAHFAPWGRE 141

Query: 110 IADSFDCLKSVHFRRMIVKDSDLELLAKSRGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
           +A  +  L+ +H +RM V D DL ++A S     ++L L  C GF T GL  +   CR
Sbjct: 142 LAQGYPWLEKLHLKRMNVTDDDLGVIADSFAGFRELL-LVCCEGFGTPGLAAIASKCR 198


>IMGA|Medtr5g093700.1 Protein AUXIN SIGNALING F-BOX 3, putative
           chr05_pseudomolecule_IMGAG_V3 36875225-36891852 E
           EGN_Mt090430 20090702
          Length = 126

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 55/86 (63%)

Query: 53  LTRKHITIALCYTTSPDRLRRRFKHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIAD 112
             R+ + I   Y+ SP RL RRF +L+SL LKGKP    F L+P DWGGFV PW+  +A 
Sbjct: 9   FIRQRVLIRNYYSVSPKRLVRRFHNLKSLTLKGKPHFNDFTLVPRDWGGFVYPWIEALAK 68

Query: 113 SFDCLKSVHFRRMIVKDSDLELLAKS 138
           +   L+ +  +R++V D  L+LL++S
Sbjct: 69  NKVGLEELRLKRIVVSDESLDLLSRS 94