Jatropha Genome Database

JcCB0041541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041541.10 + phase: 0 /pseudo/partial
         (106 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g144840.1 Cyclin-like F-box; chr03_pseudomolecule_IMG...   104   1e-23

>IMGA|Medtr3g144840.1 Cyclin-like F-box;
           chr03_pseudomolecule_IMGAG_V3 37667380-37664948 E
           EGN_Mt090430 20090702
          Length = 356

 Score =  104 bits (259), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 67/89 (75%), Gaps = 4/89 (4%)

Query: 20  FLGEIRGFDMKKGFWKELRGVEKELPRFLAGATMANVGGMLMVVWEKTXXXXXXXKEMEI 79
           +LG+I+GFD+KKG WKEL+G++K LPRFL GATMA+VGG L+VVWE         KEMEI
Sbjct: 251 YLGKIKGFDVKKGLWKELKGLDKSLPRFLCGATMADVGGKLVVVWECQRNLNGKGKEMEI 310

Query: 80  WCAEIEVEKNVKE----ELWGKVKWCDVV 104
           WCAEI+V+K  K+    ELWG+V W + V
Sbjct: 311 WCAEIDVKKKKKKNKDGELWGEVCWLNNV 339