Jatropha Genome Database

JcCB0041131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041131.10 + phase: 0 /pseudo
         (234 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g064470.1 Cyclin-dependent kinase inhibitor chr07_pse...    88   4e-18

>IMGA|Medtr7g064470.1 Cyclin-dependent kinase inhibitor
           chr07_pseudomolecule_IMGAG_V3 12973348-12970246 E
           EGN_Mt090430 20090702
          Length = 208

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 57/93 (61%), Gaps = 6/93 (6%)

Query: 142 LGIEASFGENVLDIEGRERSTRESTPCSLIRDPEXXXXXXXXXXXXXXXXXXXXIQNSAH 201
            G+E SFGEN  +I+GR+RSTRESTPCSLIRD                      IQ    
Sbjct: 104 FGVEGSFGENFAEIDGRDRSTRESTPCSLIRD----SSVIHTPGSTTRQRTNHIIQEHMQ 159

Query: 202 RHIPTSLEMDEFFARAEEEQQRQFIEKXIYSFN 234
           R+IPTS EMDEFFA AE++QQ  F+EK  Y+F+
Sbjct: 160 RNIPTSYEMDEFFALAEKQQQALFMEK--YNFD 190