Jatropha Genome Database

JcCB0040361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0040361.10 + phase: 0 
         (165 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g138430.1 Bet v I allergen chr08_pseudomolecule_IMGAG...   101   2e-22
IMGA|Medtr4g011860.1 Bet v I allergen chr04_pseudomolecule_IMGAG...    49   1e-06
IMGA|Medtr1g020630.1 Bet v I allergen chr01_pseudomolecule_IMGAG...    46   9e-06

>IMGA|Medtr8g138430.1 Bet v I allergen chr08_pseudomolecule_IMGAG_V3
           33413042-33415126 E EGN_Mt090430 20090702
          Length = 160

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 94/163 (57%), Gaps = 7/163 (4%)

Query: 1   MGIVSCEGQTELSIRAAKIFRMVVLETETYLSKVVPGAIANFVNLQGDGGPGTLRQITFV 60
           MG+ +   +   ++  +++F  +++++   + K++P  + +   ++GDGG G++ Q+ F 
Sbjct: 1   MGVTTFTHEYSSTVAPSRMFTALIIDSRNLIPKLLPQFVKDVNIIEGDGGAGSIEQVNFN 60

Query: 61  QGGPVSYVKETVDVVDKENFIFDYTIIGGDPALIDTNLIEKMSFHVTFEISPTGGTICKR 120
           +G P  Y+K+ +DV+DKEN I  YT+I GDP     + +E +++ V FE +  GG +CK 
Sbjct: 61  EGSPFKYLKQKIDVLDKENLICKYTMIEGDPL---GDKLESIAYEVKFEATNDGGCLCKM 117

Query: 121 SGKAYIIDGVEVKEDEIRADLEHTTQVFFGTLKLYEAYALANP 163
           +     I   +VKE++++   E T     G  ++ E+Y L NP
Sbjct: 118 ASSYKTIGDFDVKEEDVKEGREST----IGIYEVVESYLLENP 156


>IMGA|Medtr4g011860.1 Bet v I allergen chr04_pseudomolecule_IMGAG_V3
           1835557-1834499 E EGN_Mt090430 20090702
          Length = 215

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 29/163 (17%)

Query: 13  SIRAAKIFRMVVLETETYLSKVV--------PGAIANFVN----LQGDGGPGTLRQITFV 60
           SI + ++   VV ET   ++ V         P A  NF+     + G+G  GTLR++  +
Sbjct: 56  SISSDQLCSAVVQETTASITAVWSVVRRFDKPQAYKNFIKSCNLVGGNGDVGTLREVNLI 115

Query: 61  QGGPVSYVKETVDVVDKENFIFDYTIIGGDPALIDTNLIEKMSFHVTFEISPTGGTICKR 120
            G P +   E ++++D+E  +  ++++GGD  L   N     + H + E   +G  I   
Sbjct: 116 SGLPAARSTERLEILDEERHVISFSVVGGDHKL--ANYRSVTTLHPSAEGDGSGTVIV-- 171

Query: 121 SGKAYIID--GVEVKEDEIRADLEHTTQVFFGTLKLYEAYALA 161
             ++Y++D      KED         T VF  T+      +LA
Sbjct: 172 --ESYVVDIPSENTKED---------THVFVDTIVRCNLQSLA 203


>IMGA|Medtr1g020630.1 Bet v I allergen chr01_pseudomolecule_IMGAG_V3
           4555573-4556352 F EGN_Mt090430 20090702
          Length = 189

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 36  PGAIANFV---NLQGDGGPGTLRQITFVQGGPVSYVKETVDVVDKENFIFDYTIIGGDPA 92
           P    +F+   N++GDG  G++R++T V G P S   E ++++D E  +  + ++GG+  
Sbjct: 60  PQKYKHFIKGCNMKGDGNVGSIREVTVVSGLPASTSTERLEILDDEKHVISFRVVGGEHR 119

Query: 93  L 93
           L
Sbjct: 120 L 120