Jatropha Genome Database

JcCB0039521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0039521.10 + phase: 0 
         (307 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g129290.1 UbiA prenyltransferase chr08_pseudomolecule...    52   3e-07

>IMGA|Medtr8g129290.1 UbiA prenyltransferase
           chr08_pseudomolecule_IMGAG_V3 30490535-30497793 E
           EGN_Mt090430 20090702
          Length = 411

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 30/196 (15%)

Query: 61  LMSGPFLTGYTQTLNDYYDREIDAINEPYRPIPSGA--------ISENEVITQIWVXXXX 112
           +++  F+  Y   LN   D EID IN+PY P+ SG         I  +  I   W+    
Sbjct: 160 VVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVVSSSILSFWL---- 215

Query: 113 XXXXXXXXDVWAGHNSPTVFYLALGGSL-LSYIYSAPPLKLKQNGWIGN---FALGASYI 168
                     W   + P  + L +   L  +Y  + P L+ K+   +      ++ A  +
Sbjct: 216 ---------AWIVGSWPLFWALFISFVLGTAYSINVPLLRWKRFAVLAAMCILSVRAVIV 266

Query: 169 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLG-----IAIVNDFKSIEGDRALGLQSLPVA 223
            L ++     F    P +    L+++ A +      IA+  D   IEGD+  G+QS  V 
Sbjct: 267 QLAFFLHMQTFVYKRPVVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIQSFSVR 326

Query: 224 FGAETAKWICVGAIDI 239
            G +   WICV  +++
Sbjct: 327 LGQKRVFWICVTLLEL 342