Jatropha Genome Database
- JcCB0037791.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0037791.20 - phase: 1 /TE/pseudo/partial
(552 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g140780.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 62 7e-10
IMGA|Medtr4g140800.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 62 9e-10
IMGA|Medtr4g140820.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 62 1e-09
IMGA|Medtr4g140830.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 61 2e-09
IMGA|AC235671_8.1 HAT dimerisation AC235671.2 34285-36383 E EGN_... 60 2e-09
IMGA|Medtr4g140840.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 59 8e-09
IMGA|Medtr4g140790.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 56 4e-08
IMGA|AC235022_13.1 Zinc finger, BED-type predicted; HAT dimerisa... 55 1e-07
IMGA|Medtr2g126790.1 Zinc finger, BED-type predicted; HAT dimeri... 50 4e-06
>IMGA|Medtr4g140780.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34612007-34615090 E EGN_Mt090430 20090702
Length = 612
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 16/206 (7%)
Query: 314 KWLSYFKNIPPLYLVAIVFDPRYRIDVLCDYLTIYYDILNLDVEDNININVVMHEVKQNI 373
K+ Y+ + + V DPR ++ L + Y L+ + + +VK +
Sbjct: 362 KFEKYWDEYSVVLAMGAVLDPRIKLSTLANC----YSKLDASTRER-----KLQQVKSKL 412
Query: 374 MQLYNEFXXXXXXXXXXXXXXXXNIPQFPTQRVNGV--GVAQQVLLQRQKRTRESSSISE 431
L++++ + +++N + G+ ++ + Q+ E+ SE
Sbjct: 413 YMLFDKYSSKSTPSCVQRIIQDQSSSMPFQEKLNSLSDGLFDELKVHHQQLVTETGK-SE 471
Query: 432 FDNYLTTS-FEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFSX 490
D YL S +F D D +L WW + N FP LS+LA +L+ P++ VA + F
Sbjct: 472 LDVYLDESNLDF---RCDEDMDVLQWWKSNNNRFPDLSILACDLLSVPITTVASDFEFCM 528
Query: 491 GGNILDETRSRMTPDSLEAQACVDDW 516
G + ++ + RM P ++E + C W
Sbjct: 529 GSRVFNKYKDRMLPMNVETRMCTRTW 554
>IMGA|Medtr4g140800.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34620805-34623647 E EGN_Mt090430 20090702
Length = 480
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 14/205 (6%)
Query: 314 KWLSYFKNIPPLYLVAIVFDPRYRIDVLCDYLTIYYDILNLDVEDNININVVMHEVKQNI 373
K+ Y++ + + V DPR ++ L Y LN + +VK +
Sbjct: 256 KFEKYWEEYSVVLALGAVLDPRIKLSTL----AYCYSKLNAST-----CERKLQQVKSKL 306
Query: 374 MQLY--NEFXXXXXXXXXXXXXXXXNIPQFPTQRVNGVGVAQQVLLQRQKRTRESSSISE 431
L+ N ++P + G+ ++ + +++ E+ S+
Sbjct: 307 YMLFHKNSCKSTSSGVQRTIQDQSSSVPLQKKLKSLSQGLFDELKVHQRQLVTETEK-SQ 365
Query: 432 FDNYLTTSFEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFSXG 491
D YL S Y D D +L WW R+ N FP LS+LA +L+ P++ VA + F G
Sbjct: 366 LDVYLDESNLDFHCYEDMD--VLQWWKRNNNRFPDLSILACDLLSFPITTVASDFEFCMG 423
Query: 492 GNILDETRSRMTPDSLEAQACVDDW 516
+ ++ + RM P+++E + C W
Sbjct: 424 SRVFNKYKDRMLPNNVETRICTRTW 448
>IMGA|Medtr4g140820.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34626717-34627221 H EGN_Mt090430 20090702
Length = 135
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 430 SEFDNYLTTS-FEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAF 488
SE D Y S FG Y D D +L WW ++N FP LS+LA +L+ P++ VA + F
Sbjct: 13 SELDVYFDESDLNFGS-YEDMD--VLQWWKSNSNRFPDLSILACDLLSVPIATVASDFEF 69
Query: 489 SXGGNILDETRSRMTPDSLEAQACVDDW 516
G +L++ + RM P +E + C W
Sbjct: 70 CMGSRVLNKYKDRMLPMDVETRICTRSW 97
>IMGA|Medtr4g140830.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34628699-34631682 H EGN_Mt090430 20090702
Length = 575
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 407 NGVGVAQQVLLQRQKRTRESSSISEFDNYLTTSFEFGDDYADTDFPILDWWSRHANTFPI 466
N + V Q+ L+ ++ S+ D YL S Y D D +L WW R+ N FP
Sbjct: 440 NELKVHQRQLVTETRK-------SQLDVYLDESNLDFHCYEDMD--VLQWWKRNNNRFPD 490
Query: 467 LSLLAKQILAAPVSIVAVEQAFSXGGNILDETRSRMTPDSLEAQACVDDW 516
LS+LA +L+ P++ VA + F G + ++ R P ++E + C W
Sbjct: 491 LSILACDLLSVPIATVASDSEFCMGSRVFNKYEDRTLPTNVETRICTRSW 540
>IMGA|AC235671_8.1 HAT dimerisation AC235671.2 34285-36383 E
EGN_Mt090430 20090702
Length = 580
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 430 SEFDNYLTTSFEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFS 489
S+ D YL S YA+ D +L WW + + FP LS+LA +L+ P++ VA + F
Sbjct: 464 SQLDVYLDESVLDFRCYAEMD--VLQWWKSNNDRFPDLSILACDLLSVPIAAVASDSEFC 521
Query: 490 XGGNILDETRSRMTPDSLEAQACVDDW 516
G + ++ + RM P ++EA+ C W
Sbjct: 522 MGSRVFNKYKDRMLPMNVEARICTRSW 548
>IMGA|Medtr4g140840.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34632644-34634683 E EGN_Mt090430 20090702
Length = 575
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 430 SEFDNYLTTSFEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFS 489
S+ D YL S Y D D +L WW + N FP LS+LA+ +L+ PV+ +A + F
Sbjct: 465 SQLDIYLAESNLDFRCYEDMD--VLQWWKSNNNRFPDLSILARDLLSVPVNTIASDLDFC 522
Query: 490 XGGNILDETRSRMTPDSLEAQACVDDW 516
G ++ ++ + RM P +L+A+ C +W
Sbjct: 523 IGLHVFNKYKDRMLPMNLDARFCTRNW 549
>IMGA|Medtr4g140790.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34617776-34619868 E EGN_Mt090430 20090702
Length = 577
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 16/207 (7%)
Query: 313 KKWLSYFKNIPPLYLVAIVFDPRYRIDVLCDYLTIYYDILNLDVEDNININVVMHEVKQN 372
K+ + FK + V + DPR + L D Y L D + +VK
Sbjct: 347 KRMMGKFKKYWDEHSVVLAMDPRMKFSRLADC----YSKL-----DPSTCERKLQKVKTK 397
Query: 373 IMQLYNEFXXXXXXXXXXXXXXXXNIPQFPTQRVNGV---GVAQQVLLQRQKRTRESSSI 429
+ L++++ + P Q+ + G+ ++ ++ Q+ E+
Sbjct: 398 LYMLFDKYSSKSTSSGMQTTVQGQS-STMPLQKNSESLSHGLFDELKMKHQQLVTETEK- 455
Query: 430 SEFDNYLTTSFEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFS 489
S+ D YL S + G + D +L WW + + +P LS+LA +L+ P++ VA + F
Sbjct: 456 SQLDVYLDES-DLGF-LCNEDMDVLQWWKSNNDRYPDLSILACDLLSVPITTVASDFEFC 513
Query: 490 XGGNILDETRSRMTPDSLEAQACVDDW 516
G + ++ + RM P +E + C W
Sbjct: 514 MGSRVFNKYKDRMLPMDVETRICARSW 540
>IMGA|AC235022_13.1 Zinc finger, BED-type predicted; HAT dimerisation
AC235022.1 87203-82116 E EGN_Mt090430 20090702
Length = 1025
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 37/213 (17%)
Query: 318 YFKNIPPLYLVAIVFDPRYRIDVLC-DYLTIYYDILNLDVEDNININVVMHEVKQNIMQL 376
Y+++ ++A+V DPR+++ ++ + IY + D + I V I +L
Sbjct: 819 YWRDCSLALVIAVVMDPRFKMKLVEFSFTKIYGE----DAHGYVKI------VDDGINEL 868
Query: 377 YNEFXXXXXXXXXXXXXXXXNIPQFPTQRVNGVGVAQQVLLQRQKRTRES-SSISEFDNY 435
++E+ +P P G + + RT S + +++FD Y
Sbjct: 869 FHEYATLP-------------LPLTPAYAEEGNAGSNIKMEGSSGRTLLSDNGLTDFDAY 915
Query: 436 L--TTSFEFG---DDYAD-------TDFPILDWWSRHANTFPILSLLAKQILAAPVSIVA 483
+ T++ + D Y + DF +L WW + +P LS +A+ IL+ PVS V
Sbjct: 916 IMETSTHQTKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILSIPVSTVP 975
Query: 484 VEQAFSXGGNILDETRSRMTPDSLEAQACVDDW 516
+ F +D+ RS + P+++EA C DW
Sbjct: 976 SDSIFDKKSKEMDQYRSSLRPETVEALVCAKDW 1008
>IMGA|Medtr2g126790.1 Zinc finger, BED-type predicted; HAT
dimerisation chr02_pseudomolecule_IMGAG_V3
30782400-30785624 E EGN_Mt090430 20090702
Length = 696
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 430 SEFDNYLTTSFEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFS 489
SE + YL E + +F IL WW + +P LS +A IL+ PVS ++ + F
Sbjct: 595 SELNVYLEEPLE----SSAQEFDILSWWRINGLKYPTLSRMASDILSMPVSTLSADSIFD 650
Query: 490 XGGNILDETRSRMTPDSLEAQACVDDW 516
+D RS + +LEA C DW
Sbjct: 651 TEIRKMDNYRSLLDSVTLEALICTKDW 677