Jatropha Genome Database

JcCB0037771.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037771.30 + phase: 1 /TE/partial
         (610 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g061750.1 polyprotein, related chr03_pseudomolecule_I...    79   7e-15
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc...    59   9e-09
IMGA|Medtr5g050150.1 gag-pol polyprotein, related chr05_pseudomo...    49   5e-06

>IMGA|Medtr3g061750.1 polyprotein, related
           chr03_pseudomolecule_IMGAG_V3 14038160-14037402 H
           EGN_Mt090430 20090702
          Length = 252

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 74/138 (53%)

Query: 128 DALVVEGMMENYNVRRMLIDDGSSVNLITLEVFKALKLDITKIKSMXTPLEGLAGRQVSM 187
           D +V+   +  +NV+R+LID GS  +++  + F    LD  +++     L G  G QV +
Sbjct: 33  DPMVISLQIVKWNVKRVLIDPGSFASVLYYDTFDRRGLDPEQLQPFKGTLAGFVGEQVHV 92

Query: 188 EGSLEIALELKDREHTRTEMPKFVVMDIPFPDYAILGRPLFYTLGTYTSIRYLVMKFYSN 247
            G + +          +T   +++V++ P     I+GRP F  LG   S ++LVMK+  +
Sbjct: 93  RGYITLKTTFGHGSQAKTIRVRYLVVNSPSSYNIIIGRPAFNLLGGVLSTKFLVMKYPLD 152

Query: 248 SGDIIIVRGNQKVAKEAY 265
            G I  ++G+QKVA+E Y
Sbjct: 153 KGRIRTIKGDQKVARECY 170


>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Ribonuclease H
           chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
           EGN_Mt090430 20090702
          Length = 479

 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 31/44 (70%)

Query: 395 QKVIAIEVDKLINASFTREVHYSQWLVNVVLVPKLNGKWRLCVD 438
           +KV+  EV KL++A F  E+ Y  WL N VLV K NGKWR+CVD
Sbjct: 6   RKVVDEEVKKLVDARFISEIKYPTWLANTVLVKKENGKWRMCVD 49


>IMGA|Medtr5g050150.1 gag-pol polyprotein, related
           chr05_pseudomolecule_IMGAG_V3 21567113-21566379 H
           EGN_Mt090430 20090702
          Length = 244

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 130 LVVEGMMENYNVRRMLIDDGSSVNLITLEVFKALKLDITKIKSMX-TPLEGLAGRQVSME 188
           LV    + ++++ + L+D+GSSVN++  + F+ L L    ++S   T L G         
Sbjct: 37  LVFITGIHDHDLVKCLVDEGSSVNILYQDSFEKLGLRKEDLESYDDTELHGFNETSTHPL 96

Query: 189 GSLEIALELKDREHTRTEMPKFVVMDIPFPDYAILGRPLFYTLGTYTSIRYLVMKFYSNS 248
           G +++ +   +    RT    F+V+ + F    ILGRP    L   TS  +L MK+++  
Sbjct: 97  GYVKLGITFGNGMGERTVEASFLVILVVFVYNYILGRPTLAALDAVTSTVHLKMKYHNKR 156

Query: 249 GDIIIVRGNQKVAKEAY 265
            D + +  +  +AK  +
Sbjct: 157 EDGVTIHTDLNIAKRCH 173