Jatropha Genome Database

JcCB0037771.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037771.20 + phase: 0 /pseudo/partial
         (175 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g059250.1 Retrotransposon gag protein chr03_pseudomol...    51   3e-07

>IMGA|Medtr3g059250.1 Retrotransposon gag protein
           chr03_pseudomolecule_IMGAG_V3 13301930-13300773 H
           EGN_Mt090430 20090702
          Length = 385

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 34/182 (18%)

Query: 5   PLRPKIMSVNSPHKFKMPTFETYDGTINPRSHPANLRTVMHIQTIVDVLLFQSFPITRKG 64
           P   +I  V  P  F+ PT ++YDGT +P  H +  +T M I    D L  + F  T KG
Sbjct: 80  PFSAEIQVVEIPRNFREPTIDSYDGTSDPHGHVSTFQTQMFISGADDALSCKIFVGTLKG 139

Query: 65  PTQEWFQILKTESI------AALLSSQCHSKLGSLHVS*AKRYHQT**TLRGQMTSLFDI 118
              +W   L   S+      A    +Q  + +    +                +  LFDI
Sbjct: 140 VAHKWIAGLPARSVTNFEDMATRFVAQFAANIEKPFL----------------LADLFDI 183

Query: 119 ------------TKFQKLILQIEDLNTEMVINAMAKNCNYNKLFDSLYIDRPHSFVELMA 166
                        +F    L + + N ++ + A  K  N     ++L + + HS  E+  
Sbjct: 184 RQRPIESLKSYLARFNNATLMVMEPNEDIFVMAFEKGLNSGAFSEALTLRKEHSKNEIRM 243

Query: 167 RA 168
           RA
Sbjct: 244 RA 245