Jatropha Genome Database

JcCB0037361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037361.10 - phase: 0 /partial
         (240 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g101690.1 TLDc chr03_pseudomolecule_IMGAG_V3 24659163...   168   2e-42
IMGA|Medtr3g101690.2 TLDc chr03_pseudomolecule_IMGAG_V3 24659163...   166   1e-41

>IMGA|Medtr3g101690.1 TLDc chr03_pseudomolecule_IMGAG_V3
           24659163-24662022 E EGN_Mt090430 20090702
          Length = 372

 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/258 (43%), Positives = 146/258 (56%), Gaps = 37/258 (14%)

Query: 1   MGKAKSFRSKAVHFVSDLTTVFLNPISDXXXXXXXXXXXVTEDLSESKRSQLQSITEEDT 60
           M K +S R+KA +FVS    V LNPISD             ED+ E K+S      E + 
Sbjct: 1   MKKKQSLRNKATNFVS----VLLNPISDPPDSHKHPPPSSQEDVGELKKSD----EEGNN 52

Query: 61  GDLADGPDTSSFTAFXXXXXXXXXXGVNSNADEKNDSVAEIVDQPSDSTR--------KE 112
            D+ DGPDTSSFTAF            N+N++ KND    + +  S S+         KE
Sbjct: 53  HDVVDGPDTSSFTAFLYSLWSSSDSKENANSNGKNDDKGGLDNDNSSSSNSSLPDSSIKE 112

Query: 113 SSTKKSLLSRGKQSLR-AIYQAARIGGYRGQEQKFESDMKYTDESDDNFDGLEMKHMQNV 171
           +  +KSL SR KQS+  AI +  RIG +  Q +K           D++ + +EMK     
Sbjct: 113 NGGRKSLFSRSKQSVGGAIRRVVRIGRFHHQGRK-----------DNSNNVVEMKLQDKR 161

Query: 172 EQAVEARE---------LPDVSEPSLLLSEKARNALYASLPALVQGRKWLLLYSTWRHGI 222
           +++V  +E         +P +SEPS+L+S+  RN LYASLP L+ GRKWLLLYSTWR+GI
Sbjct: 162 KESVPVKEKSSSVALDDMPGISEPSVLVSKSIRNVLYASLPPLMHGRKWLLLYSTWRNGI 221

Query: 223 SLATLYRRSMLWPGLSLL 240
           SL+TLYRRSMLWPGLSLL
Sbjct: 222 SLSTLYRRSMLWPGLSLL 239


>IMGA|Medtr3g101690.2 TLDc chr03_pseudomolecule_IMGAG_V3
           24659163-24662022 E EGN_Mt090430 20090702
          Length = 371

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/258 (43%), Positives = 147/258 (56%), Gaps = 38/258 (14%)

Query: 1   MGKAKSFRSKAVHFVSDLTTVFLNPISDXXXXXXXXXXXVTEDLSESKRSQLQSITEEDT 60
           M K +S R+KA +FVS    V LNPISD            +ED+ E K+S      E + 
Sbjct: 1   MKKKQSLRNKATNFVS----VLLNPISDPPDSHKHPPPS-SEDVGELKKSD----EEGNN 51

Query: 61  GDLADGPDTSSFTAFXXXXXXXXXXGVNSNADEKNDSVAEIVDQPSDSTR--------KE 112
            D+ DGPDTSSFTAF            N+N++ KND    + +  S S+         KE
Sbjct: 52  HDVVDGPDTSSFTAFLYSLWSSSDSKENANSNGKNDDKGGLDNDNSSSSNSSLPDSSIKE 111

Query: 113 SSTKKSLLSRGKQSLR-AIYQAARIGGYRGQEQKFESDMKYTDESDDNFDGLEMKHMQNV 171
           +  +KSL SR KQS+  AI +  RIG +  Q +K           D++ + +EMK     
Sbjct: 112 NGGRKSLFSRSKQSVGGAIRRVVRIGRFHHQGRK-----------DNSNNVVEMKLQDKR 160

Query: 172 EQAVEARE---------LPDVSEPSLLLSEKARNALYASLPALVQGRKWLLLYSTWRHGI 222
           +++V  +E         +P +SEPS+L+S+  RN LYASLP L+ GRKWLLLYSTWR+GI
Sbjct: 161 KESVPVKEKSSSVALDDMPGISEPSVLVSKSIRNVLYASLPPLMHGRKWLLLYSTWRNGI 220

Query: 223 SLATLYRRSMLWPGLSLL 240
           SL+TLYRRSMLWPGLSLL
Sbjct: 221 SLSTLYRRSMLWPGLSLL 238