Jatropha Genome Database

JcCB0036891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0036891.10 - phase: 1 /pseudo/partial
         (367 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ; chr04_ps...   528   e-150
IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanas...   221   4e-58

>IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ;
           chr04_pseudomolecule_IMGAG_V3 40981878-40992441 E
           EGN_Mt090430 20090702
          Length = 788

 Score =  528 bits (1359), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 240/319 (75%), Positives = 281/319 (88%), Gaps = 3/319 (0%)

Query: 41  GAEVETMVVVDQPKLRRRYQVSEGHPAPFGATASDDGVNFSVYSTNAVSASLCLISLDDL 100
           G + ET V+  +   +R+ Q+S+GHP+P+GAT  +DGVNF++ S N++SA+LC  +L D 
Sbjct: 57  GVDTETAVIEIE---KRQLQLSKGHPSPYGATPQEDGVNFAINSLNSLSATLCFFTLSDF 113

Query: 101 PKNKVTEEIPLDPLTNKTGDIWHVFLKGDFKDMLYGYRFDGKLSPEEGHYFESSEIVLDP 160
             NKVTE I LDPL NKTG +WHVFLKGDFKDMLY Y+FDGK SP++GHY++SS I++DP
Sbjct: 114 KNNKVTEYITLDPLVNKTGCVWHVFLKGDFKDMLYAYKFDGKFSPQQGHYYDSSRILIDP 173

Query: 161 YAKAVISRGEFGVLGPDDNCWPQMAGMIPAARDKFDWEGDLPLKYPQKDLMIYEMHVRGF 220
           YAKAVISRGEFG +GPD NCWPQMAGM+P   ++FDWEGDLPLKYPQKDL+IYEMHVRGF
Sbjct: 174 YAKAVISRGEFGEVGPDGNCWPQMAGMVPFDNEEFDWEGDLPLKYPQKDLIIYEMHVRGF 233

Query: 221 TQHESSRTEFPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSYNSVLGDYKMNFW 280
           T+HESS+ EFPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSYN++ GDY++NFW
Sbjct: 234 TKHESSKAEFPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSYNAIQGDYRVNFW 293

Query: 281 GYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREAHKRGIEVIMDVVFNHTAEGNEKG 340
           GYST+NYFSPM RYSSAG +NCG D INE KLL++EAHKRGIEVIMDVVFNHTAEGNEKG
Sbjct: 294 GYSTINYFSPMIRYSSAGIQNCGRDGINEMKLLIKEAHKRGIEVIMDVVFNHTAEGNEKG 353

Query: 341 PILSFRGVDNSVYYMLAPK 359
           PI+SFRGVDNSVYYM+APK
Sbjct: 354 PIISFRGVDNSVYYMVAPK 372


>IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanase,
           type I; ; ; chr03_pseudomolecule_IMGAG_V3
           39571747-39562313 E EGN_Mt090430 20090702
          Length = 672

 Score =  221 bits (563), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/343 (39%), Positives = 196/343 (57%), Gaps = 40/343 (11%)

Query: 45  ETMVVVDQPKLRRRYQVSEGHPAPFGATASDDGVNFSVYSTNAVSASLCLI-----SLDD 99
           E + VV+    R  ++ S G   P G +  D+G+NF+++S +A + +LCL+     S+D 
Sbjct: 85  EAIEVVEN---RPSWETSPGQAFPLGVSQVDNGINFAIFSQHATAVTLCLLLPERGSIDT 141

Query: 100 LPKNKVTEEIPLDPLTNKTGDIWHVFLKGDF--KDMLYGYRFDGKLSPEEGHYFESSEIV 157
           L    +  E+ LDP +NKTGDIWH+ ++ D    ++LYGY+ DG      GH F+ S ++
Sbjct: 142 LDGGMI--ELALDPHSNKTGDIWHICIE-DLPRSNVLYGYQIDGPQDWGTGHRFDRSIVL 198

Query: 158 LDPYAKAVISRGEFGVLGPDDNCWPQMAGMIPAARDKFDWEGDLPL-KYPQKDLMIYEMH 216
           +DPYAK +  R  FG +        +  G        FDW  +  L    +KDL+IYEM+
Sbjct: 199 VDPYAKLIEGRRYFGDISRK---LSKFLGTYDFDSLPFDWGENYNLPNIAEKDLVIYEMN 255

Query: 217 VRGFTQHESSRTE--FPGTYLGVVEKLD-----------------HLKELGVNCIELMPC 257
           VR FT  ESS  +    G+YLGV+EK+                  HL ELG+N +EL+P 
Sbjct: 256 VRAFTMDESSELDNNIRGSYLGVIEKVTSVLSLGITVQYGVSMIPHLLELGINAVELLPI 315

Query: 258 HEFNELEYYSYNSVLGDYKMNFWGYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREA 317
            EF+E+E     +   D+ +N WGYST+N+F+PM+RY+SAG      +A  E K +V+  
Sbjct: 316 FEFDEMELQRRPNPR-DHMINTWGYSTINFFAPMSRYASAGGGPA--NASQELKQMVKAL 372

Query: 318 HKRGIEVIMDVVFNHTAEGNEKGP-ILSFRGVDNSVYYMLAPK 359
           H  GIEVI+DVV+NHT E ++  P   SFRG+DN VYYML  K
Sbjct: 373 HSAGIEVILDVVYNHTNEADDPNPYTTSFRGIDNKVYYMLDDK 415