Jatropha Genome Database
- JcCB0036391.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0036391.20 - phase: 2 /TE/partial
(764 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 485 e-137
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 467 e-131
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 461 e-130
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 399 e-111
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 361 e-100
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 323 2e-88
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 251 1e-66
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 237 2e-62
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 236 3e-62
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 173 2e-43
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 164 1e-40
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 162 7e-40
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 149 5e-36
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 144 1e-34
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 117 2e-26
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 117 3e-26
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 112 5e-25
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 110 2e-24
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 110 3e-24
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 109 4e-24
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 108 1e-23
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 96 5e-20
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 93 5e-19
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 90 3e-18
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 89 1e-17
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 87 3e-17
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 77 3e-14
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 72 8e-13
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 70 3e-12
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 69 9e-12
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 69 1e-11
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 67 4e-11
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 66 8e-11
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 61 2e-09
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 58 2e-08
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 58 2e-08
IMGA|Medtr4g104320.1 hypothetical protein chr04_pseudomolecule_I... 57 4e-08
IMGA|Medtr3g162300.1 retrotransposon like protein, putative chr0... 57 5e-08
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 55 1e-07
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 55 1e-07
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 55 2e-07
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 55 2e-07
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 53 5e-07
IMGA|Medtr5g043900.1 hypothetical protein chr05_pseudomolecule_I... 52 1e-06
IMGA|Medtr3g148550.1 Cyclin-like F-box; F-box protein interactio... 52 1e-06
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 485 bits (1249), Expect = e-137, Method: Compositional matrix adjust.
Identities = 294/781 (37%), Positives = 413/781 (52%), Gaps = 27/781 (3%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L + GI H +S TPQ NG ER+H+H++ G LL + LP ++W +A
Sbjct: 626 GPEFMLSTLYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPAYWCYAI 685
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
+ A +LINR+PT L SPY L + P+ + +VF CLCY K +R+
Sbjct: 686 QHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLFKVFGCLCYASTLQSHTTKLKHRARKS 745
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSETSWYDFATEPVT 180
+F+GY + Y + S +IF S HV F EN P+ +S+T W F+ T
Sbjct: 746 IFIGYQSGYKGFTLYDLHSREIFISRHVTFHENFLPYPHTSSST---SPDWQYFSYFHPT 802
Query: 181 SIVPFLSSNMSVDESISSSTAPVSLSPTPIESMP--PSVDIQSFPTPVNLHRMVTRSKNN 238
+ P L S +D+ I+ +P +P P ++ P L + NN
Sbjct: 803 PVAPNLPSPPIIDDIIAPDHPSPDPTPPTSPILPIVPRHSTRNVTAPSYLQDYIC---NN 859
Query: 239 I--FKPKVXNSVTKHXXXXXXXXXXVK-----------QALAIPDWRQAMTSEFNALLDN 285
I F + +S++ H + +A + W+ AM E AL
Sbjct: 860 IHAFTYPITHSLSHHHLSNSRSFFVMSLHTQPEPKSYAEASKLDCWKHAMQVELQALEKT 919
Query: 286 NTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGVDYSDTFSPVVK 345
TW LV + C+WI++VK +ADG+++RYKARLVA+GY+Q G+DY DT+SPV K
Sbjct: 920 GTWKLVDLPPNVKPIGCRWIYKVKFHADGTVERYKARLVAKGYNQIEGLDYLDTYSPVAK 979
Query: 346 PMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPGFKDPTKPTHVCKLIKAL 405
T+RLV+ L+ W + QLDVNNAFLHG L EDVYM PPG K +K VCKL K+L
Sbjct: 980 LTTVRLVIALSSINNWHLHQLDVNNAFLHGDLQEDVYMMVPPGIKS-SKLNQVCKLTKSL 1038
Query: 406 YGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVYCYFLIYVDDIVITGNNNGF 465
YGLKQA R Y+ L + + + D+SLF + L+YVDDI++ GN+
Sbjct: 1039 YGLKQASRKWYEKLTSVLFDQHYTQATSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISE 1098
Query: 466 VQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYIQKLLEHAKMDGAKEIST 525
L F +KD L FLG++V GI Q Y LL G+K IST
Sbjct: 1099 FSHIKSILDSLFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADIGSLGSKPIST 1158
Query: 526 PMASDIQLQKXKNETLPV-DATAYRKLIGGLQYLNLTRPDIAFTVNKLSQYMQHPNADHW 584
P S I+L + + P D A R+L+G L YLN TRPDI F +LSQ++ P H
Sbjct: 1159 PSDSSIKLH--LDSSSPFEDVPACRRLVGRLLYLNNTRPDITFITQQLSQFLSQPTQAHH 1216
Query: 585 LALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDRTSTTGFILYLGKVPISW 644
A R+L+YLKS G+ + + +SDADWA R S +G +LG ISW
Sbjct: 1217 SAALRVLKYLKSCPGKGLFFPRSSSLNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISW 1276
Query: 645 SSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQEV-DTPVIYCDNISTMYTCQN 703
+KKQ TV++SS+EAEYRA+AS E++W+ LL++L PV+YCDN S ++ N
Sbjct: 1277 RTKKQITVSKSSSEAEYRALASATCELQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANN 1336
Query: 704 LVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLAD-ITKSLSKVKFQQNRAKIGIH 762
VFH R KHLEID H +R+ +Q G +++ +SS+DQ+AD TK+L F +K+G+
Sbjct: 1337 PVFHERTKHLEIDCHLIRDKLQSGVLKLLTVSSQDQVADFFTKALLPKPFNILLSKLGLI 1396
Query: 763 N 763
N
Sbjct: 1397 N 1397
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust.
Identities = 293/791 (37%), Positives = 405/791 (51%), Gaps = 39/791 (4%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L ++ +GI H +S TPQ NG ER+H+H++ G LL + LP S+WS+A
Sbjct: 609 GPEFLLNSFYASKGIVHHKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPSSYWSYAL 668
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A ++INR+ + L SPY+ L G P+ + +VF LCY + K R+
Sbjct: 669 LHAIFIINRVTSPTLHNKSPYQLLHGTIPDVQTFKVFGSLCYSTTLQSHRTKLSARARKT 728
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSETSWYDFATEPVT 180
VFLGY+ Y+ I + +I S HV+F E+ P+ S T+W F+++ +
Sbjct: 729 VFLGYAVGYKGYVLLDIHTREIHISRHVQFHEHILPYPTNPSTI---TTTWDYFSSDSCS 785
Query: 181 SIVPF--------LSSNMSVDESISSSTAPVSLSPTPIESMPPSVDIQSFPT--PVNLHR 230
+ P + +D S S+SP P PP + S T P +L
Sbjct: 786 ASNPLPKSSTISPIIPPPFIDVDTPPSDDNHSVSPIP---QPPVIRKSSRITQPPTHLQD 842
Query: 231 MVTR----------------SKNNIFKPKVXNSVTKHXXXXXXXXXXVKQALAIPDWRQA 274
V S NN+ +++ +A W+QA
Sbjct: 843 YVCSVSDDTSFVQYPISHYLSYNNLSSSHCAFALS---LDSHTEPTTYAEASKFDCWKQA 899
Query: 275 MTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGV 334
M E +AL + TW LV + C+WI+++K +ADGS++RYKARLVA+GY+Q G+
Sbjct: 900 MQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHADGSIERYKARLVAKGYNQIEGL 959
Query: 335 DYSDTFSPVVKPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPGFKDPTK 394
DY DT+SPV K T+R ++ LA W I QLDVNNAFLHG L EDVYM P G P+K
Sbjct: 960 DYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFLHGDLQEDVYMIVPQGIT-PSK 1018
Query: 395 PTHVCKLIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVYCYFLIYVD 454
VCKLIK+LYGLKQA R Y+ L + V + + S DHSLF + L+YVD
Sbjct: 1019 SNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSDHSLFIKKTYTSFTALLVYVD 1078
Query: 455 DIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYIQKLLEH 514
D++ITG + Q L +KD L FLG++V + GI Q Y LL
Sbjct: 1079 DVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEVAHSSQGISLCQRKYCLDLLTD 1138
Query: 515 AKMDGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIAFTVNKLSQ 574
AK STP +L D +YR+LIG L YL TRP I F +LSQ
Sbjct: 1139 IGFLAAKPASTPSDPSCKLHADGGPPFS-DIPSYRRLIGRLIYLTNTRPYITFATQQLSQ 1197
Query: 575 YMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDRTSTTGFI 634
++ P H++A R+LRYLK + G+ + + YSDADWA R S +G
Sbjct: 1198 FLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGYSDADWAGCLDSRRSISGQC 1257
Query: 635 LYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELG-QEVDTPVIYCD 693
+LG ISW +KKQ TV+RSS+EAEYRA+ + E++W+ LL +L V V+YCD
Sbjct: 1258 FFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLLYLLHDLHVTTVKLHVLYCD 1317
Query: 694 NISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLAD-ITKSLSKVKF 752
N S ++ N VFH R KHLEID H VRE +Q +++ ++S DQLAD TK L F
Sbjct: 1318 NQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKLLPVTSADQLADFFTKPLLPQPF 1377
Query: 753 QQNRAKIGIHN 763
K+G+ N
Sbjct: 1378 HTLLFKLGMLN 1388
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 295/779 (37%), Positives = 406/779 (52%), Gaps = 65/779 (8%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L ++ GI H +S TPQ NG ER+H+H++ G LL + LP SFWS+A
Sbjct: 620 GPEFLLNDFYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPSFWSYAI 679
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A +LINR+PT++L SPY L + P+ +++F K+K R+
Sbjct: 680 LHAVFLINRVPTHVLHNQSPYHVLFHKLPD---IQLF------------KSKLQPRARKS 724
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSETSWYDFATEPVT 180
+FLGY Y + + + +IF S HV F EN P++ T + SW F+ P T
Sbjct: 725 LFLGYKSGYKGYHLFDLSTREIFVSRHVIFHENILPYT---FTTSSTTPSWDYFS--PST 779
Query: 181 SIVPFLSSNMSVDESISSSTAPVSLSPTPIESMPPSVDIQSFPTPVNLHRMVTRSK--NN 238
+ +S +P + TP S+P + +L R TR+K +
Sbjct: 780 T---------------ETSHSPNNTPSTPSASLPHTQSSSPSVPVSHLPRHSTRNKISPS 824
Query: 239 IFKPKVXNSVTK----------HXXXXXXXXXXV------------KQALAIPDWRQAMT 276
+ V NS+ H V +A W++AM
Sbjct: 825 YLQDYVCNSINSTTYPISHYLSHNKLSSHHSSYVLSLHTHNEPKTYAEANKHECWQKAMQ 884
Query: 277 SEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGVDY 336
E AL TW V + C+W+F++K++ADGS++RYKARLVA+GY+Q G+DY
Sbjct: 885 VELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIERYKARLVAKGYTQVEGLDY 944
Query: 337 SDTFSPVVKPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPGFKDPTKPT 396
DTFSPV K T+RL++ LA W + QLDVNNAFLHG L E+VYM PPG T
Sbjct: 945 FDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYMTLPPGISAKHSNT 1004
Query: 397 HVCKLIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVYCYFLIYVDDI 456
VCKL K+LYGLKQA R Y L + + + + + DHSLF Y L+YVDDI
Sbjct: 1005 -VCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTGTSYTILLVYVDDI 1063
Query: 457 VITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYIQKLLEHAK 516
++ G++ Q L F +KD L FLG++V GI Q Y LL +
Sbjct: 1064 ILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLGLEVAHSQLGISLCQKKYCLDLLADSG 1123
Query: 517 MDGAKEISTPMASDIQLQKXKNETLPV-DATAYRKLIGGLQYLNLTRPDIAFTVNKLSQY 575
G+K STP SD L+ K+ LP D +YR+LIG L YLN TRPDI + +LSQ+
Sbjct: 1124 TIGSKPASTP--SDPSLKLHKDGALPYEDIPSYRRLIGRLLYLNTTRPDITYITQQLSQF 1181
Query: 576 MQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDRTSTTGFIL 635
+ P H A R+LRYLK+ G+ + + YSDADWA R S +G
Sbjct: 1182 LSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCF 1241
Query: 636 YLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQEV-DTPVIYCDN 694
+LG ISW +KKQ TV+RSS+EAEYRA+AS E++W+ LL++L PV++CDN
Sbjct: 1242 FLGNSLISWRTKKQVTVSRSSSEAEYRALASATCELQWLIYLLQDLHVTCTKLPVLFCDN 1301
Query: 695 ISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLAD-ITKSLSKVKF 752
S ++ N VFH R KHLEID H VRE + G +++ +SSK+Q+AD TKSL F
Sbjct: 1302 QSALHIAANPVFHERTKHLEIDCHIVREKLHSGILKLLPVSSKEQVADFFTKSLHPQPF 1360
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/494 (44%), Positives = 293/494 (59%), Gaps = 6/494 (1%)
Query: 271 WRQAMTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQ 330
W +AM +E AL TW +V + + C+WI++VK NADGS++RYKARLVA+GY+Q
Sbjct: 751 WNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIERYKARLVAKGYTQ 810
Query: 331 GPGVDYSDTFSPVVKPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPGFK 390
G+DY +T+SPV K T+RLV+ LA W + QLDVNNAFLHG L EDVYM PPG
Sbjct: 811 IEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGELQEDVYMILPPGI- 869
Query: 391 DPTKPTHVCKLIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVYCYFL 450
+ KP VCKL K+LYGLKQA R Y+ L + + + ++ DHSLF + L
Sbjct: 870 NIAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKKSSDSFTILL 929
Query: 451 IYVDDIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYIQK 510
+YVDDI++ G + Q+ L F +KD L FLG++V GI Q Y
Sbjct: 930 VYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEVAHSKLGISLYQRKYCLD 989
Query: 511 LLEHAKMDGAKEISTPMASDIQLQKXKNETLPVDAT-AYRKLIGGLQYLNLTRPDIAFTV 569
LL + G+K ISTP +L + + P D AYR+L+G L YLN TRPDI F
Sbjct: 990 LLHDSGHIGSKPISTPSDPSTKLH--HDTSTPYDDIPAYRRLVGRLLYLNNTRPDITFIT 1047
Query: 570 NKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDRTS 629
+LSQ++ +P H A R LRYLKS G+ + + +SDADWA R S
Sbjct: 1048 QQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGFSDADWAGCLDTRKS 1107
Query: 630 TTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQEVDT-P 688
TG +LG ISW +KKQ TV+RSS+EAEYRA+AS E++W+ LL +L P
Sbjct: 1108 VTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLLYLLNDLHITCSKPP 1167
Query: 689 VIYCDNISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLAD-ITKSL 747
V+YCDN S ++ N VFH R KHLEID H VRE +Q G +++ +SS+DQ+AD TK+L
Sbjct: 1168 VLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPVSSQDQIADFFTKAL 1227
Query: 748 SKVKFQQNRAKIGI 761
F +K+G+
Sbjct: 1228 LPKTFSLLLSKLGL 1241
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 258/785 (32%), Positives = 365/785 (46%), Gaps = 124/785 (15%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L +++ +GI H +S TPQ NG ER+H+H++ G LL + LP+SFWS+AF
Sbjct: 18 GSEFLLHEFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAF 77
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A +LINR+PT +L SPY L P+ T+ +VF CLCY + K + R+
Sbjct: 78 LHAVFLINRIPTPVLHNFSPYHLLYDSPPDITTFKVFGCLCYASSLQSHRTKLETRARKS 137
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSETSWYDFATEPVT 180
VFLGY Y+ Y + + +IF S HV F E P+ +S+ L W F +
Sbjct: 138 VFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPYKSISSSQSLD---WEYFTSISSL 194
Query: 181 SIVPF---LSSNMSVDESISSSTAPVSLSPTPIESMPPSVDIQSFP--TPVNLHRMV--- 232
I+P +S + S + + + + +PT S PP + S +P L +
Sbjct: 195 LIIPSVSDISHSPSTTKYVPHTQPTTTTTPTNDPSRPPPIRCSSRNKISPSYLKDYICPH 254
Query: 233 --TRSKNNIFKPKVXNSVTKHXXXXXXXXXXVK-----------QALAIPDWRQAMTSEF 279
+ S NN++ + N V+ H + +A WRQAM E
Sbjct: 255 KSSTSVNNLYS--ISNYVSYHNISNPHSHFILSLHAHNEPKTYTEANKFECWRQAMQVEL 312
Query: 280 NALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGVDYSDT 339
AL + TW ++ + C+WI+++K NAD +++RYKARLVA+GY+Q G+DY DT
Sbjct: 313 TALENTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTIERYKARLVAKGYNQVEGLDYFDT 372
Query: 340 FSPVVKPMTIRLVVTLAITKAW--PIVQLDVNNAFLHGPLTEDVYMQQPPGFKDPTKPTH 397
+SPV K TIRL ++ W + L VN
Sbjct: 373 YSPVAKHTTIRLA-----SRKWYEKLASLLVN---------------------------- 399
Query: 398 VCKLIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVYCYFLIYVDDIV 457
+G KQA + DHSLF + L+YVDDI+
Sbjct: 400 --------HGYKQA--------------------SADHSLFIKHSTTQFTALLVYVDDII 431
Query: 458 ITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYIQKLLEHAKM 517
+ GN+ L F +KD L FLG++V GI Q Y LL +
Sbjct: 432 LAGNSLDEFTFIKNILHNSFKIKDLGQLKYFLGLEVAHSKLGISLCQRKYGLDLLSDTGL 491
Query: 518 DGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIAFTVNKLSQYMQ 577
+K ++TP I+L + L D AYR+L+G L YLN TRPDI F +LSQ++
Sbjct: 492 LDSKPVATPSDPSIKLYH-DDSPLYTDIPAYRRLVGRLLYLNATRPDITFITQQLSQFLS 550
Query: 578 HPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDRTSTTGFILYL 637
P H+ A R+LRYLK+ G+ + + YSDADWA R S +G +L
Sbjct: 551 KPTQTHYNAALRVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFL 610
Query: 638 GKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQEVDTPVIYCDNIST 697
G ISW +KKQ TV+RSS+EAEYRA+ + S
Sbjct: 611 GDSLISWRTKKQLTVSRSSSEAEYRALGAATS---------------------------- 642
Query: 698 MYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLAD-ITKSLSKVKFQQNR 756
N VFH R KHLEID H VRE + G +++ ISSK+QLAD TKS+ F
Sbjct: 643 -----NPVFHERTKHLEIDCHIVREKLAAGIMKLLPISSKNQLADCFTKSILPQPFNSLL 697
Query: 757 AKIGI 761
K+G+
Sbjct: 698 FKLGL 702
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 323 bits (827), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 216/642 (33%), Positives = 309/642 (48%), Gaps = 98/642 (15%)
Query: 9 YFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAFRTAAYLIN 68
+FQ +GI H +S P+TPQ NG ER+H+ ++ET LL + LP+ +WS RT
Sbjct: 102 FFQSKGIIHQKSCPYTPQQNGVVERKHKFILETARALLFQSKLPVKYWSEFHRT------ 155
Query: 69 RLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPCVFLGYSPN 128
KFD +++P VF+GY
Sbjct: 156 -------------------------------------------KFDPKTIPHVFVGYPYA 172
Query: 129 KSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSE-----TSWYDFATEPVTSIV 183
Y ++ + KI S V F E FPF+ T + S +D+ T
Sbjct: 173 TKGYKVLNLSTQKIHVSRDVIFHETIFPFAMSKDPTHFPKFPFHCVSLHDYPTS------ 226
Query: 184 PFLSSNMSVDESISS--------STAPVSLSPTPIESMP--------------------- 214
+ + S E+ +S ST+P ++P S+P
Sbjct: 227 -YDDQDYSSKETTTSPTHITPENSTSPTHITPENSTSIPQLRRSQRLHKTPTYLTDYVHN 285
Query: 215 -PSVDIQSF--PTPVNLHRMVTRSKNNIFKPKVXNSVTKHXXXXXXXX---XXVKQALAI 268
PS + + P P +L + + P V + ++ ++A
Sbjct: 286 VPSSTVSNSQPPQPHSLPLNALFTLKHYVSPDVFSFDSQSFIMNISHDCEPNSYEEASMD 345
Query: 269 PDWRQAMTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGY 328
P W++AMT EF AL DNNTW L V C+W+++VK ADGS++RYKARLV +GY
Sbjct: 346 PAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVERYKARLVVKGY 405
Query: 329 SQGPGVDYSDTFSPVVKPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPG 388
+Q G+DY++TFSPVVK T+R ++ A K W I QLDVNNAFLHG L E+VYM PPG
Sbjct: 406 TQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPG 465
Query: 389 FKDPTKPTHVCKLIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVYCY 448
P K VCKL K+LYGLKQA R Y+ L G+ S D+SLFY + +
Sbjct: 466 LATPHKDL-VCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKKRGASNVF 524
Query: 449 FLIYVDDIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYI 508
+YVDDI++TG + + + L +F +KD L FLG++V + GI +Q ++
Sbjct: 525 LGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKDDGILVSQRKFV 584
Query: 509 QKLLEHAKMDGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIAFT 568
LL+ D +S+P+ +I+L+ + + L D T YRKLIG L +L TR D+A+
Sbjct: 585 LDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLD-DPTYYRKLIGKLNFLTHTRLDLAYG 643
Query: 569 VNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADF 610
V LSQYMQ P H A +LRYLK G+ + A+F
Sbjct: 644 VQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMSSAANF 685
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 209/416 (50%), Gaps = 39/416 (9%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L ++ +GI H +S TPQ NG ER+H+H++ G LL + LP+SFWS+AF
Sbjct: 637 GSEFLLHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAF 696
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A +LINR+PT +L+ SPY+ L +P+ T+ +VF CLCY + K + R+
Sbjct: 697 LHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKS 756
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSETSWYDFAT---- 176
VFLGY + Y + + +IF S HV F E P+ +S + F+T
Sbjct: 757 VFLGYKSGFKGSVLYDLHTREIFISRHVVFHECVLPYKSNSSPQSHDWEYFTSFSTPLDL 816
Query: 177 ---------EPVTSIVPFLSSNMSVDESISSSTAPVSLSPTPIESMPPSV---------- 217
+T IVP+ S + SI P+ + PPS
Sbjct: 817 PSGTDTSPHSAITDIVPYTSPTPTSTSSIIDIPPPLPTRHSSRNKTPPSYLKDFICANKS 876
Query: 218 -----DIQSFPTPVNLHRMVTRSKNNIFKPKVXNSVTKHXXXXXXXXXXVKQALAIPDWR 272
+ S V+ H + + I S+ H +A WR
Sbjct: 877 SASVNSLHSISNFVSYHNISNSHSHFIL------SLHAHTEPKSYT-----EANKFECWR 925
Query: 273 QAMTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGP 332
QAM E AL + TW ++ S + C+WI++VK +ADG+++RYKARLVA+GY+Q
Sbjct: 926 QAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGTIERYKARLVAKGYNQVE 985
Query: 333 GVDYSDTFSPVVKPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPG 388
G+DY DT+SPV K TIRLV+ LA W + QLDVNNAFLHG L EDVYM PPG
Sbjct: 986 GLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDLQEDVYMDIPPG 1041
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 169/293 (57%), Gaps = 2/293 (0%)
Query: 275 MTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGV 334
M SE AL TW +V A + C+WIF++K N DGS++RYKARLVA+GY+Q G+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 335 DYSDTFSPVVKPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPGFKDPTK 394
DY DT+SPV K T+R ++ LA W + Q DVNNAFLHG L EDVYM PPG +
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPH-SH 119
Query: 395 PTHVCKLIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVYCYFLIYVD 454
VCKL K+LYGL+QA Y+ L ++ G++ +A D SLF + L+YVD
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVD 179
Query: 455 DIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYIQKLLEH 514
D+++ G+ + L F +KD L FLG++V GI Q Y LLE
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLED 239
Query: 515 AKMDGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIAF 567
+ + G+K ++TP I+L + P D AYR+LIG L YLN TRPDI +
Sbjct: 240 SGLTGSKPMNTPSDPSIKLHNDSAPSFP-DIPAYRRLIGRLLYLNTTRPDITY 291
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 236 bits (603), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 187/315 (59%), Gaps = 17/315 (5%)
Query: 450 LIYVDDIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYIQ 509
LIYVDD+VI GN+ + +F Q L + F +KD PL FLG+++ + G+F Q Y
Sbjct: 4 LIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRKYTL 63
Query: 510 KLLEHAKMDGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIAFTV 569
+L+ KM K + PM + +L K T D + YR+LI L YL + P+I ++V
Sbjct: 64 DILDECKMLDCKPSTFPMEQNQKLVLDKGPTCS-DPSRYRRLISRLIYLTIMHPEITYSV 122
Query: 570 NKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDRTS 629
+ L+ R+LRYLKS+ GI + K+ D AY D+DWAS P R S
Sbjct: 123 HILTM--------------RVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRS 168
Query: 630 TTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQEVDTP- 688
T+G+++ LG PISW +KKQ TV++SS+EAEYRA+ SEV W+ SLL L D+P
Sbjct: 169 TSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSPT 228
Query: 689 VIYCDNISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLADI-TKSL 747
V+ CDN + M+ N V+H R KH+E+D HF+R +Q G I +++ +K Q ADI TK+L
Sbjct: 229 VLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTKAL 288
Query: 748 SKVKFQQNRAKIGIH 762
+FQ+ K+G+H
Sbjct: 289 GAKQFQELTFKLGVH 303
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 140/261 (53%), Gaps = 6/261 (2%)
Query: 437 LFYYIKDGVYCYFLIYVDDIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQI 496
+F D + L+YVDDI++ GN+ Q L F +KD L LG++V
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 497 NGGIFSTQHHYIQKLLEHAKMDGAKEISTPMASDIQLQKXKNETLP--VDATAYRKLIGG 554
GI Q Y LL + +K +ST + ++L N++ P D +YR+LIG
Sbjct: 61 KQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLH---NDSSPPYEDIPSYRRLIGR 117
Query: 555 LQYLNLTRPDIAFTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHA 614
L YLN TRPDI F +LSQ++ P H A R+L+YLK G+ + +
Sbjct: 118 LLYLNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQG 177
Query: 615 YSDADWASDPSDRTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWV 674
+SD DWA R S +G ++G ISW +KKQ TV+RSS+EAEYRA+AS E++W+
Sbjct: 178 FSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWI 237
Query: 675 TSLLRELG-QEVDTPVIYCDN 694
LL++L Q PV++CDN
Sbjct: 238 LYLLKDLNIQSSKLPVLFCDN 258
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 173/348 (49%), Gaps = 20/348 (5%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L +++ +GI H S TPQ NG ER+H+H++ G LL + LP+SFWS+AF
Sbjct: 111 GSEFLLHEFYASKGILHQSSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAF 170
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A +LINR+ T +L SPY L P+ T+ +VF CLCY K + R+
Sbjct: 171 LHAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKVFGCLCYASSLQSHITKLETRARKS 230
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSETSWYDFATEPVT 180
VFLGY Y+ Y + + +IF S HV F E P+ +S+ L + ++ P+
Sbjct: 231 VFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPYKSISSSQSLDWEYFTSISSPPII 290
Query: 181 SIVPFLSSNMSVDESISSSTAPVSLSPTPIESMPPSVDIQSFP--TPVNLHRMV-----T 233
V +S + S ES+ + + +PT S PP + S +P L + +
Sbjct: 291 PSVSDISHSPSTIESVPHTQPTTTTTPTNDPSPPPPIRCSSRNKISPSYLKDYICPHKSS 350
Query: 234 RSKNNIFKPKVXNSVTKHXXXXXXXXXXVK-----------QALAIPDWRQAMTSEFNAL 282
S NN++ + N V+ H + +A WRQAM E AL
Sbjct: 351 TSVNNLYS--ISNYVSYHNISNPHSHFILSLHAHNEPKTYTEANKFECWRQAMQVELTAL 408
Query: 283 LDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQ 330
+ TW ++ + C+WI+++K +ADG+++RYKARLVA+GY+Q
Sbjct: 409 ENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTIERYKARLVAKGYNQ 456
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 135/468 (28%), Positives = 183/468 (39%), Gaps = 126/468 (26%)
Query: 263 KQALAIPDWRQAMTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKAR 322
KQA + P W+ AM+ E +AL TW+
Sbjct: 157 KQAQSDPRWQLAMSPELSALEATGTWIF-------------------------------- 184
Query: 323 LVARGYSQGPGVDYSDTFSPVVKPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVY 382
VD SP+ RL D NN FLHG L EDVY
Sbjct: 185 -----------VDPPPNISPIGSKWIFRLN--------------DANNTFLHGDLQEDVY 219
Query: 383 MQQPPGFKDPTKPTHVCKLIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIK 442
M P G P +P VCKL+K+LYGLKQA R ++ L + + GF ++ DHS
Sbjct: 220 MHPPQGVS-PPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQASADHSFLIRAS 278
Query: 443 DGVYCYFLIYVDDIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFS 502
+ LIY V + GI
Sbjct: 279 PTSFTALLIY----------------------------------------VAHSSKGISL 298
Query: 503 TQHHYIQKLLEHAKMDGAKEISTPMASDIQLQKXKNETLPV-DATAYRKLIGGLQYLNLT 561
Q Y LL A + K +STP+ L ++ P D AYR LIG L YL T
Sbjct: 299 CQRKYCLDLLSDAGLTTCKSVSTPLDYACLLH--IDDGPPFDDVLAYRCLIGCLLYLTTT 356
Query: 562 RPDIAFTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWA 621
RPDI+F +LSQ+M P+ +H +LRYL+ G+ + ++ +SDADW
Sbjct: 357 RPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQLLGFSDADWG 416
Query: 622 SDPSDRTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVT-SLLRE 680
G V +R++A EA +R + S + + S R
Sbjct: 417 ----------------GCV------DSRRSLAFQ--EAIHRFLFFLRSGISCFSISHPRT 452
Query: 681 LGQEVDTPVIYCDNISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGE 728
+ ++YCDN S ++ N VF+ R KHL+ID H VRE VQRG
Sbjct: 453 PMAHIRLSILYCDNQSALHIAANPVFYERTKHLDIDCHIVREKVQRGS 500
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 126/453 (27%), Positives = 197/453 (43%), Gaps = 104/453 (22%)
Query: 285 NNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGVDYSDTFSPVV 344
N TW L+ + KW+F++K N +G + ++KA
Sbjct: 210 NQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKA----------------------- 246
Query: 345 KPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPGFKDPTKPTHVCKLIKA 404
RLV + + K GF D T+ V KL KA
Sbjct: 247 -----RLVARVFLKK---------------------------EGF-DYTEV--VFKLNKA 271
Query: 405 LYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVYCYFLIYVDDIVITGNNNG 464
LYGLKQAPRA + + F V GF+ +H ++ +G
Sbjct: 272 LYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYVKGSEGT------------------- 312
Query: 465 FVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYIQKLLEHAKM-DGAKEI 523
SL L + +++ + G+ Q Y ++ + M D I
Sbjct: 313 -------------SL-------LIICLEILRTTKGLILNQTKYDTEIQKKFNMLDFNSSI 352
Query: 524 STPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIAFTVNKLSQYMQHPNADH 583
+ A++I + K E VD T R+LIG L+YL +R DI+++V +S++M +P H
Sbjct: 353 TLAYANNIN--EVKEEDKGVDPTILRRLIGLLRYLCQSRLDISYSVGIVSKFMSNPLKTH 410
Query: 584 WLALKRLLRYLKSTIYYGI---SIIKQADFGFHAYSDADWASDPSDRTSTTGFILYLGKV 640
+LA K+++RY+ T+ YGI + YSDADW D DR TT F+ L
Sbjct: 411 FLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGA 470
Query: 641 PISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQEVDTPV-IYCDNISTMY 699
PISWSSKKQ VA SS E EY +S A + W+ ++L + ++ P+ + DN +
Sbjct: 471 PISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQPIKLLIDNKYAIN 530
Query: 700 TCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVT 732
+N + H + KH+E H++R+ V + +I +
Sbjct: 531 LAKNHISHGKSKHIETKFHYLRDQVNKCKINIV 563
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 44 TLLQTASLPMSFWSFAFRTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYP 103
++L+ +P FW A TA Y++NR PT +K P E + P+ ++L+VF + Y
Sbjct: 4 SMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSIFYK 63
Query: 104 CLRPYMKNKFDNRSLPCVFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKF 155
+ + K ++++ + +GY N AY + S KI + V+ +E ++
Sbjct: 64 HVPDSRRKKLEDKTEAMILVGYH-NTGAYRLLDLHSKKISITRDVKVLEEEY 114
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 121/231 (52%), Gaps = 29/231 (12%)
Query: 449 FLIYVDDIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVR-QINGGIFSTQHHY 507
++YV D+++TGNN +Q V L FSLKD L FLG++V+ Q NG + TQ Y
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKY 60
Query: 508 IQKLLEHAKMDGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIAF 567
++ LL M AK + +PM SD++L K T D T R ++ LQY NL P
Sbjct: 61 VRDLLAKTDMQEAKSLPSPMISDLKLSK-DGSTPFSDPTLCRSIVRALQYANLIGP---- 115
Query: 568 TVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISI--IKQADFGFHAYSDADWASDPS 625
L +LR+LK T+ +G+ + I AY DADW SDP
Sbjct: 116 -------------------LSNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADWGSDPD 156
Query: 626 DRTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTS 676
DR + ++LG ISW +KKQ +ARSSTEAEY ++A SE+ W+ +
Sbjct: 157 DR--SVDACVFLGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIKT 205
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 87/161 (54%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G + ++ +GI H S TPQ NG ER+H+H++ LL + LP FWS++
Sbjct: 660 GPEFLMPDFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKIFWSYSV 719
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A Y+INR+PT LL+ SPY G +P+ + +VF CL Y + KFD+R+ C
Sbjct: 720 LHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKC 779
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKN 161
VFLGY + Y + IF S +V + E+ P+S+ N
Sbjct: 780 VFLGYKQGIKGAILYDLNHKTIFASRNVTYHEHILPYSNSN 820
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 95/192 (49%), Gaps = 5/192 (2%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G + ++ +GI H S TPQ NG ER+H+H++ LL + LP FWS++
Sbjct: 590 GPEFLMPDFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKVFWSYSV 649
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A Y+INR+PT LL+ SPY G +P+ + +VF CL Y + KFD+R+ C
Sbjct: 650 LHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKC 709
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSETSWYDFATEPVT 180
VFLGY + Y + IF S +V + E+ P+S+ W + P+
Sbjct: 710 VFLGYKQGIKGAILYDLNHKTIFASRNVTYHEHILPYSNSKQYFQ-----WQYHSNHPII 764
Query: 181 SIVPFLSSNMSV 192
+ SSN +
Sbjct: 765 PVTEQTSSNFEL 776
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 76/125 (60%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L ++ +GI H +S TPQ NG ER+H+H++ G LL + LP+SFWS+AF
Sbjct: 637 GSEFLLHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAF 696
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A +LINR+PT +L+ SPY+ L +P+ T+ +VF CLCY + K + R+
Sbjct: 697 LHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKS 756
Query: 121 VFLGY 125
VFLGY
Sbjct: 757 VFLGY 761
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L++++ ++GI H +S +TPQ NG ERRH+H++ L+ + LP +FWS+A
Sbjct: 662 GPEFMLREFYDKKGIIHQRSCVYTPQQNGRVERRHQHILNISRALMFQSKLPKNFWSYAV 721
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A YLINR+PT +L S YE L + P+ +SL+VF CL Y P + KFD ++ C
Sbjct: 722 LHAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPVNRYKFDPKARKC 781
Query: 121 VFLGY 125
FLG+
Sbjct: 782 AFLGF 786
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Query: 589 RLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDRTSTTGFILYLGKVPISWSSKK 648
R+L YLK G+ +Q+ Y++ADWA D S +
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRR---------------SISE 46
Query: 649 QRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQE-VDTPVIYCDNISTMYTCQNLVFH 707
Q SS+EAEYRA+AS E++ +T LLR+L + PV+YCDN S +Y N VFH
Sbjct: 47 QCFFCWSSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVFH 106
Query: 708 TRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLAD-ITKSLSKVKFQQNRAKIGI 761
KHLEID H VRE +Q G ++ ISSKDQ+AD TKSL F +K+G+
Sbjct: 107 ECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGM 161
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L ++ +GI H +S TPQ NG ER+H+H++ G LL + LP+S+WS+A
Sbjct: 617 GPEFLLHSFYASKGIVHHRSCVETPQQNGRVERKHQHILNVGRALLYQSKLPVSYWSYAL 676
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A ++INR+ + L SPY+ L P +VF LCY + K R+
Sbjct: 677 LHATFIINRVTSPTLHNKSPYQLLHDTIPAEHIFKVFGSLCYSTTLHSHRTKLSARARKS 736
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSETSWYDFATEPVT 180
VFLGY+ Y+ I + +I S HV+F E+ P+ +S+ T+W F+++ +
Sbjct: 737 VFLGYTVGFKGYVLLDIHTREIHISRHVQFYEHILPYPATSSSI---TTAWEYFSSDTCS 793
Query: 181 SIVPFLSSNMSVDESISSSTAPVSLSPTPIESMPPSVDIQSFPT 224
S P +S P++L +P PP +D+ PT
Sbjct: 794 SSNP-------------NSDTPITLPSSP----PPFIDVDIPPT 820
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 74/143 (51%), Gaps = 28/143 (19%)
Query: 275 MTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGV 334
M +E AL + TW LV + C+WI+++K ADGS+QRYKARLV +GY+Q G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 335 DYSDTFSPVVKPMTIRLVV----------------------------TLAITKAWPIVQL 366
DY DT+SPV K T RLVV LA W I +L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 367 DVNNAFLHGPLTEDVYMQQPPGF 389
D N+AFLHG L EDVYM P G
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGI 143
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Query: 651 TVARSSTEAEYRAVASTASEVKWVTSLLRELGQEVDTP-VIYCDNISTMYTCQNLVFHTR 709
TV++SS+EAEYRA+A+T E++W+T LL++ + TP ++YCD+ S + N FH R
Sbjct: 248 TVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHER 307
Query: 710 MKHLEIDIHFVREMVQRGEIRVTHISSKDQLADI-TKSLSKVKFQQNRAKIGIHN 763
KH+E+D H VRE +Q+ + +SS QLAD+ TK L + F +K+G+ +
Sbjct: 308 TKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKLGLKD 362
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G + +++ GI H +S TPQ NG ER+H H++ G LL + LP S+WS+A
Sbjct: 593 GPEFLILSFYESLGILHQKSCVETPQQNGRVERKHHHILNVGRALLYQSKLPASYWSYAL 652
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A +LINR PT LL+ SPY L + P+ + KN+ R+
Sbjct: 653 LHAVFLINRKPTPLLEGQSPYYALHHKFPDIDTF---------------KNQASTRARKT 697
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPF-SDKNSATDLSETSWYDFATEPV 179
VFLGY ++ I S +IF S HV F E P+ S+ S T + W F+ P+
Sbjct: 698 VFLGYKSGYKGFILLDIHSREIFVSRHVVFHEYFLPYPSNSESIT----SQWEYFS--PI 751
Query: 180 TSIV 183
++V
Sbjct: 752 QAVV 755
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G + +++ +GI H +S TPQ NG ER+H+H++ LL + LP FWS+A
Sbjct: 648 GPEFLIPEFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQSKLPNFFWSYAV 707
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
A +LIN++PT L K SPY+ L P+ S +VF CLC+ ++K +R+
Sbjct: 708 IHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFASTLLAQRSKLQSRARKS 767
Query: 121 VFL 123
+F
Sbjct: 768 IFF 770
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 53/77 (68%)
Query: 383 MQQPPGFKDPTKPTHVCKLIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIK 442
M QP GF P P VCKL K+LYGLKQAP+A +QAL+ F + Y F+ + D SLF Y+K
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 443 DGVYCYFLIYVDDIVIT 459
+ YFL+YVDDI +T
Sbjct: 61 ANTFAYFLVYVDDIPLT 77
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 63/101 (62%)
Query: 401 LIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVYCYFLIYVDDIVITG 460
L K+LYGLKQA R Y L + YGF+ S DHSLF Y ++ ++ LIYVDD+VI G
Sbjct: 5 LRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLVIAG 64
Query: 461 NNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIF 501
N+ + +F Q L + F +KD PL FLG+++ + G+F
Sbjct: 65 NDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLF 105
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 48/81 (59%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L ++ GI H +S TPQ NG ER+H+H++ G LL + LP SFWS+A
Sbjct: 585 GPEFMLPSFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPSFWSYAI 644
Query: 61 RTAAYLINRLPTYLLKLVSPY 81
A +LINR+PT LL SPY
Sbjct: 645 HHAVFLINRVPTPLLHNQSPY 665
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 87/212 (41%), Gaps = 42/212 (19%)
Query: 1 GEYVALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAF 60
G L ++ QGI H +S TPQHN
Sbjct: 570 GHVFLLSAFYASQGIIHQRSCVETPQHN-------------------------------- 597
Query: 61 RTAAYLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPC 120
+LINR+PT +L+ SPY+ L P+ S +VF CLCY + K +R+
Sbjct: 598 ---VFLINRVPTLVLENKSPYQVLYKTLPDINSFKVFGCLCYASTLQSHRTKLQSRARKS 654
Query: 121 VFLGYSPNKSAYLCYHIESGKIFESHHVEFVENKFPFSDKNSATDLSETSWYDFATEPVT 180
VFLGY Y + + +IF S +V F E+ P+ NS ++W F P
Sbjct: 655 VFLGYKSGYKGSFLYDLNTKEIFMSRNVTFHESILPY---NSTNTHFSSNWQYFT--PSH 709
Query: 181 SIVPFLSSNMSVDESISSSTAPVSLSPTPIES 212
+ PF+ ++ V + SS SP P+ +
Sbjct: 710 TQTPFV--DVPVPSTFPSSPIITPSSPLPLRT 739
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 49/154 (31%)
Query: 542 PVDATAYRKLIGGLQYLNLTRPDIAFTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYG 601
P++AT YR++IG L+Y+ RP IA +G
Sbjct: 34 PMNATIYRQIIGPLRYMCNKRPYIA---------------------------------HG 60
Query: 602 ISIIKQADFGFHAYSDADWASDPSDRTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEY 661
+ ++K D D+ STT ++ +G PISWSSKKQ VA SS+EA+Y
Sbjct: 61 VGLVK---------------GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKY 105
Query: 662 RAVASTASEVKWVTSLLRELGQ-EVDTPVIYCDN 694
A + A + W+ LL EL EVD + DN
Sbjct: 106 VATSYAACQALWIEMLLEELNAFEVDRIKLLVDN 139
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Query: 491 MDVRQINGGIFSTQHHYIQKLLEHAKMDGAKEISTPMASDIQLQKXKNETLPVDATAYRK 550
M++ + G+ Q Y ++L+ M T ++I + + K E VD T +R+
Sbjct: 1 MEILINSKGLILHQTDYASEILKKFNMLDCNSTITHADANI-IYEVKEEDEGVDPTMFRR 59
Query: 551 LIGGLQYLNLTRPDIAFTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGIS-IIKQA- 608
LIG L+YL +RP I++ V +S++M +P ++L+ K++LRY+ ST+ YGI ++ QA
Sbjct: 60 LIGSLRYLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQAT 119
Query: 609 -DFGFHAYSDAD 619
YSDAD
Sbjct: 120 EQLDMEGYSDAD 131
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 23 HTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAFRTAAYLINRLPTYLLKLVSPYE 82
+TPQHNG AER ++ L+E +L L +FW+ A T YL+NR P + L + YE
Sbjct: 4 NTPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYE 63
Query: 83 KLVGQNPNYTSLRVFECLCY 102
G++ +Y++LRVF C Y
Sbjct: 64 LWPGKSVDYSNLRVFGCTVY 83
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 456 IVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHYIQKLLEHA 515
++I+G+++ ++ Q L F +KD +PLS FLG++ N +F +Q Y L+ A
Sbjct: 1 MIISGDDSIGIEELKQFLCHHFEMKDLEPLSYFLGLEALSSNDDLFLSQAKYASDLVSQA 60
Query: 516 KMDGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIAFTVNKLS 573
+ K T + +IQ ++ TL DAT Y +G L YL TRP+I++ V+ +S
Sbjct: 61 GLTDCKIEYTRLEPNIQFTP-QDGTLLDDATLYWHFVGSLIYLTNTRPNISYFVHLVS 117
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 53/93 (56%)
Query: 275 MTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGV 334
MT++ A+ N W L ++ CKW +R+K +G+++R+K L+ + Y++ GV
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 335 DYSDTFSPVVKPMTIRLVVTLAITKAWPIVQLD 367
+ DTFS V K + L++++ + K + QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 543 VDATAYRKLIGGLQYLNLTRPDIAFTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGI 602
VD T +R LIG L+YL TRPD+A ++ LSQ+MQ+ H +A+KR+L Y+K + + I
Sbjct: 26 VDFTQFRMLIGCLRYLCNTRPDLALSIGLLSQFMQNLGVSHMIAVKRMLIYIKGKVEHAI 85
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 606 KQADFGFHAYSDADWASDPSDRTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVA 665
K+ + YSD+D D DR ST+G + ISW +K+Q A SS EAEY A
Sbjct: 7 KKGESKLEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAGT 66
Query: 666 STASEVKWVTSLLRELGQE 684
A + W+ ++++EL E
Sbjct: 67 FAACQAIWLDNVIKELNCE 85
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 662 RAVASTASEVKWVTSLLRELGQEVDTPVI-YCDNISTMYTCQNLVFHTRMKHLEIDIHFV 720
+A+A SE KW+ L + +P+I YCDN S+M+ N VFH R KH+EID H V
Sbjct: 2 QALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVV 61
Query: 721 REMVQR 726
R+ ++
Sbjct: 62 RDKIKH 67
>IMGA|Medtr4g104320.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711151-22711574 H
EGN_Mt090430 20090702
Length = 99
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 41/140 (29%)
Query: 275 MTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGV 334
M E +++ N T LV + + KW++++K N +G
Sbjct: 1 MLEELSSIKKNKTLELVGLSTDEKAIGVKWVYKLKTNHEGK------------------- 41
Query: 335 DYSDTFSPVVKPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPGFKDPTK 394
I K P+ D+ FL+G L E ++++QP G + K
Sbjct: 42 ----------------------IVKKVPLFHFDMKLYFLNGSLEETMFVKQPSGLEIKCK 79
Query: 395 PTHVCKLIKALYGLKQAPRA 414
+V KL K LYGLKQAPRA
Sbjct: 80 EENVYKLHKDLYGLKQAPRA 99
>IMGA|Medtr3g162300.1 retrotransposon like protein, putative
chr03_pseudomolecule_IMGAG_V3 42355834-42354953 H
EGN_Mt090430 20090702
Length = 58
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 620 WASDPSDRTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYR 662
WA P R STT + ++LG ISW+SKKQ TV+RSSTEAEYR
Sbjct: 8 WAGCPLTRRSTTDYCIFLGSNCISWASKKQPTVSRSSTEAEYR 50
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 693 DNISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLADI-TKSLSKVK 751
DNIST+ +N + H R KH+E+ H++RE V +G++++ H S++Q+AD+ TK +
Sbjct: 30 DNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGVKIEV 89
Query: 752 FQQNRAKIGI 761
F + R + I
Sbjct: 90 FTKPRDSMEI 99
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 679 RELGQEVDTPV-IYCDNISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSK 737
R +G +V V + DNIST+ +N + H R KH+E+ H++RE V +G++++ H S+
Sbjct: 106 RLIGSQVFIAVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSE 165
Query: 738 DQLADI-TKSLSKVKFQQNRAKIGI 761
+Q+AD+ TK + F + R + I
Sbjct: 166 NQIADVLTKGVKIEVFTKPRDSMEI 190
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 680 ELGQEVDTPVIYCDNISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQ 739
++G EV + DN S + +N +FH + KH+E HF+R+ V + E+ V + ++DQ
Sbjct: 5 KIGDEVAVK-LKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQ 63
Query: 740 LADI-TKSLSKVKFQQNRAKIGIHN 763
L D+ TK+L + +F + R +I + N
Sbjct: 64 LTDLFTKALKRDQFLKLRREIRVVN 88
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 366 LDVNNAFLHGPLTEDVYMQQPPGFKDPTKPTHVCKLIKALYGLKQAPRA 414
+DV+NAFLHG L EDVYM+ P GF + VCKL K+ Y LK AP+
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSSRL-VCKLRKSQYVLKHAPQC 48
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 21/68 (30%)
Query: 269 PDWRQAMTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGY 328
P+W++AM +V C+W++++K A G +++YKARLVA+GY
Sbjct: 4 PEWQKAMA---------------------KIVGCRWVYKIKYKASGEIEKYKARLVAKGY 42
Query: 329 SQGPGVDY 336
+Q G D+
Sbjct: 43 TQVEGEDF 50
>IMGA|Medtr5g043900.1 hypothetical protein
chr05_pseudomolecule_IMGAG_V3 18173647-18173465 H
EGN_Mt090430 20090702
Length = 60
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 539 ETLPVDATAYRKLIGGLQYLNLTRPDIAFTVNKLSQYMQHPNADHW 584
+T DA+ Y L+ L YL LTRPD+AF VNKLSQ MQ+P H
Sbjct: 12 DTTNCDASLYLSLVRPLHYLALTRPDVAFPVNKLSQNMQNPTVFHL 57
>IMGA|Medtr3g148550.1 Cyclin-like F-box; F-box protein interaction
domain chr03_pseudomolecule_IMGAG_V3 38683285-38681571 E
EGN_Mt090430 20090702
Length = 455
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 313 DGSLQRYKARLVARGYSQGPGVDYSDTFSPVVKPMTIRLVVTLAIT 358
DGS+ +YKARL+A+ Q G+D+S+T SP+VKP TI +V+T ++
Sbjct: 410 DGSIYKYKARLLAKVLHQQGGIDFSETLSPLVKPTTICVVLTTPLS 455