Jatropha Genome Database

JcCB0035141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0035141.10 - phase: 0 /partial
         (561 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g028080.1 IQ calmodulin-binding region chr01_pseudomo...   390   e-108
IMGA|Medtr1g027980.1 hypothetical protein chr01_pseudomolecule_I...    64   2e-10

>IMGA|Medtr1g028080.1 IQ calmodulin-binding region
           chr01_pseudomolecule_IMGAG_V3 6729726-6724562 E
           EGN_Mt090430 20090702
          Length = 784

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 270/580 (46%), Positives = 353/580 (60%), Gaps = 59/580 (10%)

Query: 1   MESTPKSRPIHIKCDSSKPSSAWNWLERWISVSS--AAPTPQPNLKTEEVERENKDENLF 58
           +ESTPK++PIH+KCD SK  SAW WLERW+ VS+  +A   +P   TE+ + E KD    
Sbjct: 231 LESTPKNKPIHVKCDPSKGDSAWKWLERWMFVSAKDSAEDKKPICTTEQSD-ETKDSTHA 289

Query: 59  TVAETAVPSEGFSELADSKSNKETVLPSETDENQITYDADDSKFQQHHPTSSLLGDNSVQ 118
           + +ET +PS+   +L+DS       LPSE +E   TY   +S FQ    +SSL+ DN  +
Sbjct: 290 SQSETDIPSQVILQLSDSP------LPSEDEEKTATYYDTNSHFQASLSSSSLIKDNLEE 343

Query: 119 -PQFNTISTSTSDAKESSIDIKSLPNQNMQSNENYQMEINSHFHKAEIEGEETDQPKRSM 177
            P   T+   T D+K +S +I S  N+ M+SN +   E NS  ++     E  +Q K S 
Sbjct: 344 SPPEKTV---TYDSKVTSTEIDSFQNEIMESNASVGHEPNSPQNQ-----EIGEQYKLST 395

Query: 178 KRNASEQLETEGKRFVFGSRKIGNPAFIAVQSKFEELSSTANSNKSFSLSYQDGAVESNM 237
           K  AS+QLETEGK+  FGSRK+ NP+FIA QSKFEELSS +NS +   L  QD +VES  
Sbjct: 396 KAFASDQLETEGKKITFGSRKLSNPSFIAAQSKFEELSSNSNSGRPSGLLDQDVSVESQ- 454

Query: 238 DTISSGADTVVRTKELNLVGNSVPNNLRGQCGDSECGTELSVTSTLDSPDIFEVGATEYE 297
                 AD+   +KE     NS P   R    D E GT LS++STLDSPD  E    E E
Sbjct: 455 ------ADSAYISKEFISSENSTPYPSRN--ADPESGTVLSISSTLDSPDRSET--LEIE 504

Query: 298 HEAKSSEKETYNRNSTIDVVVEAKDVPTD--PVSNPFDYLMVQPEKLDTVKDESVDSVVA 355
           H+AK   +   N  +  D  VEA + PT   P+S+  D L    E ++  +   VDSV+ 
Sbjct: 505 HDAKDLVEGIVNPENKTDHGVEA-NTPTSNLPISDS-DQL----ETVNGSRGNVVDSVMP 558

Query: 356 ADSLHVELKPERSASDVQRELYSETGGPAYRSSPEASPRSHMTVPESQGTPSSQVSVKPK 415
            +S    ++PE+ ASD+ RE  +ET    +  S +ASP S+MT+PESQGTPSSQVSVK K
Sbjct: 559 ENSKEHAVEPEKIASDLLRE-QTETVLQDFTYSQQASPGSYMTIPESQGTPSSQVSVKTK 617

Query: 416 RNRSDKSASSQKRKSLSAGK------------------RSPSNPNHDSGARSSMEQLPKD 457
            N+ +K+ SS +R+ LS G                   +SP+N NHDSG+R S EQLPKD
Sbjct: 618 ENKINKTGSSSRRRVLSVGNKSPANSNQDSGSRVFVGTKSPANANHDSGSRGSREQLPKD 677

Query: 458 QKNGKRRNSFGSSRPDNTDQEAR--DXXXXXXLPHFMQATESARAKIQANNSPRSSPDVH 515
           Q NGKRRNSFGS +P++TDQE    +      LP FMQAT+SA+AKI AN+SPRSSPDVH
Sbjct: 678 QLNGKRRNSFGSIKPEHTDQEPTKDNSSSNNTLPRFMQATQSAKAKINANSSPRSSPDVH 737

Query: 516 DREY-IKKRQSLPGSNGRQSSPSIQRSLSQAQPGTKGNGS 554
           D +  IKKR SLPG+ G+Q SP +++SLS A  GTKGNGS
Sbjct: 738 DTDINIKKRHSLPGATGKQGSPRVEQSLSPAPQGTKGNGS 777


>IMGA|Medtr1g027980.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 6682626-6681894 E
           EGN_Mt090430 20090702
          Length = 71

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 2/58 (3%)

Query: 448 RSSMEQLPKDQKNGKRRNSFGSSRPDNTDQEA-RD-XXXXXXLPHFMQATESARAKIQ 503
           ++S EQ PKDQ NGKRRNS GS +PD+TDQE  RD       LP FMQ  +SA+AKI+
Sbjct: 6   QASREQFPKDQLNGKRRNSLGSLKPDHTDQETIRDNSSSNNFLPRFMQTAQSAKAKIK 63