Jatropha Genome Database

JcCB0035061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0035061.10 - phase: 0 /pseudo
         (220 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g163900.1 PGAP1-like chr03_pseudomolecule_IMGAG_V3 43...   236   7e-63

>IMGA|Medtr3g163900.1 PGAP1-like chr03_pseudomolecule_IMGAG_V3
           43147289-43145841 E EGN_Mt090430 20090702
          Length = 314

 Score =  236 bits (602), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 115/164 (70%), Positives = 131/164 (79%), Gaps = 2/164 (1%)

Query: 28  RPAVILPGLGNNTADYQKLEVTLKE-YGVPTVVAKVSRFDWFRNAAGLVDPNYWRGTLQP 86
           RPAVILPGLGNN+ DYQKLE TL   YGV TVVAKVSR DW RNAAGL+DPNYWRGTLQP
Sbjct: 33  RPAVILPGLGNNSGDYQKLEATLNNNYGVSTVVAKVSRPDWLRNAAGLIDPNYWRGTLQP 92

Query: 87  RPVLDWYMKRIQEAVNEAKELAQG-GTLSLIGHSAGGWLARVYMEEFGLSDISXXXXXXX 145
            P+LDWY+KR+ +AV EA +LA    TLSLIGHSAGGWLAR+YM++FG+S+IS       
Sbjct: 93  TPILDWYLKRVDDAVQEAMDLAPPETTLSLIGHSAGGWLARLYMQQFGVSNISLLLTLGT 152

Query: 146 XXXXXXKGVPGVIDQTRGLLYYVEEHCAKAVYNPQLKYVCIAGR 189
                 KGVPGVIDQTRGLL YV+++C+K VY P LKYVCIAGR
Sbjct: 153 PHHPPPKGVPGVIDQTRGLLDYVQQYCSKPVYTPHLKYVCIAGR 196