Jatropha Genome Database

JcCB0034881.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034881.20 + phase: 0 /pseudo
         (158 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g009190.1 Dynamin central region; Dynamin; Dynamin GT...   229   5e-61
IMGA|AC235758_24.1 Dynamin central region; Dynamin; Dynamin GTPa...   221   1e-58
IMGA|Medtr4g156910.1 Dynamin central region; Dynamin; Dynamin GT...   190   3e-49
IMGA|Medtr4g156910.2 Dynamin central region; Dynamin chr04_pseud...   189   4e-49
IMGA|Medtr8g009280.1 Dynamin central region; Dynamin; Dynamin GT...   184   2e-47
IMGA|Medtr2g009740.1 Dynamin central region; Dynamin; Dynamin GT...   118   1e-27
IMGA|Medtr2g009740.3 Dynamin central region; Dynamin; Dynamin GT...   118   1e-27
IMGA|Medtr4g121300.1 Dynamin central region; Dynamin; Dynamin GT...   106   6e-24
IMGA|Medtr4g121440.1 Dynamin central region; Dynamin; Dynamin GT...   106   6e-24

>IMGA|Medtr5g009190.1 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr05_pseudomolecule_IMGAG_V3
           1949615-1944184 E EGN_Mt090430 20090702
          Length = 611

 Score =  229 bits (583), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 112/135 (82%), Positives = 118/135 (87%), Gaps = 1/135 (0%)

Query: 1   MENLISLVNKIQRACTALGDHGEA-SALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDF 59
           MENLISLVNKIQRACTALGDHGEA ++LPTLWDSLP+IA            LESVVGKDF
Sbjct: 1   MENLISLVNKIQRACTALGDHGEAATSLPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDF 60

Query: 60  LPRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTK 119
           LPRGSGIVTRRPLVLQL K DEG+REYAEFLHLPRKRFTDF  VRKEIQDETDRETGRT+
Sbjct: 61  LPRGSGIVTRRPLVLQLQKIDEGNREYAEFLHLPRKRFTDFGDVRKEIQDETDRETGRTR 120

Query: 120 QISSVPIHLSIYSPN 134
           QIS+VPIHLSIYSPN
Sbjct: 121 QISTVPIHLSIYSPN 135


>IMGA|AC235758_24.1 Dynamin central region; Dynamin; Dynamin GTPase
           effector AC235758.1 170271-163793 H EGN_Mt090430
           20090702
          Length = 620

 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/134 (80%), Positives = 115/134 (85%), Gaps = 1/134 (0%)

Query: 1   MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFL 60
           MENLI LVNKIQRACTALGDHGE SALPTLWD+LP+IA            LES+VGKDFL
Sbjct: 1   MENLIQLVNKIQRACTALGDHGEESALPTLWDALPSIAVVGGQSSGKSSVLESIVGKDFL 60

Query: 61  PRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
           PRGSGIVTRRPLVLQLHK DEG REYAEF+H PRKRFTDFAAVR+EI DETDRETGR+K 
Sbjct: 61  PRGSGIVTRRPLVLQLHKIDEG-REYAEFMHAPRKRFTDFAAVRQEISDETDRETGRSKG 119

Query: 121 ISSVPIHLSIYSPN 134
           ISSVPIHLSIYSP+
Sbjct: 120 ISSVPIHLSIYSPH 133


>IMGA|Medtr4g156910.1 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr04_pseudomolecule_IMGAG_V3
           38973287-38965071 E EGN_Mt090430 20090702
          Length = 552

 Score =  190 bits (482), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 108/134 (80%), Gaps = 3/134 (2%)

Query: 1   MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFL 60
           M +LI L+NKIQRACT LGDHG      +LW++LP++A            LESVVG+DFL
Sbjct: 4   MTSLIGLINKIQRACTVLGDHGGEGL--SLWEALPSVAVVGGQSSGKSSVLESVVGRDFL 61

Query: 61  PRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
           PRGSGIVTRRPLVLQLHK++ G +EYAEFLHLPRKRFTDFAAVRKEI DETDR TG++KQ
Sbjct: 62  PRGSGIVTRRPLVLQLHKTENG-QEYAEFLHLPRKRFTDFAAVRKEIADETDRITGKSKQ 120

Query: 121 ISSVPIHLSIYSPN 134
           IS++PI LSIYSPN
Sbjct: 121 ISNIPIQLSIYSPN 134


>IMGA|Medtr4g156910.2 Dynamin central region; Dynamin
           chr04_pseudomolecule_IMGAG_V3 38973287-38966205 E
           EGN_Mt090430 20090702
          Length = 511

 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 108/134 (80%), Gaps = 3/134 (2%)

Query: 1   MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFL 60
           M +LI L+NKIQRACT LGDHG      +LW++LP++A            LESVVG+DFL
Sbjct: 4   MTSLIGLINKIQRACTVLGDHGGEGL--SLWEALPSVAVVGGQSSGKSSVLESVVGRDFL 61

Query: 61  PRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
           PRGSGIVTRRPLVLQLHK++ G +EYAEFLHLPRKRFTDFAAVRKEI DETDR TG++KQ
Sbjct: 62  PRGSGIVTRRPLVLQLHKTENG-QEYAEFLHLPRKRFTDFAAVRKEIADETDRITGKSKQ 120

Query: 121 ISSVPIHLSIYSPN 134
           IS++PI LSIYSPN
Sbjct: 121 ISNIPIQLSIYSPN 134


>IMGA|Medtr8g009280.1 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr08_pseudomolecule_IMGAG_V3
           1289979-1297612 F EGN_Mt090430 20090702
          Length = 637

 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/137 (63%), Positives = 108/137 (78%), Gaps = 3/137 (2%)

Query: 1   MENLISLVNKIQRACTALGDHGEASA---LPTLWDSLPAIAXXXXXXXXXXXXLESVVGK 57
           ME+LI LVN+IQ+ACT LGD+G + +     +LW++LP++A            LES+VG+
Sbjct: 4   MESLIGLVNRIQQACTKLGDYGGSDSNNTFSSLWEALPSVAVVGGQSSGKSSVLESIVGR 63

Query: 58  DFLPRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGR 117
           DFLPRGSGIVTRRPLVLQLHK ++G +EYAEFLH P ++ TDFA VR+EIQDETDR TG+
Sbjct: 64  DFLPRGSGIVTRRPLVLQLHKIEDGEKEYAEFLHRPGRKITDFAMVRQEIQDETDRITGK 123

Query: 118 TKQISSVPIHLSIYSPN 134
           TKQIS +PIHLSIYSPN
Sbjct: 124 TKQISPIPIHLSIYSPN 140


>IMGA|Medtr2g009740.1 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr02_pseudomolecule_IMGAG_V3
           2202134-2213835 E EGN_Mt090430 20090702
          Length = 835

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 83/131 (63%), Gaps = 8/131 (6%)

Query: 4   LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFLPRG 63
           +ISLVN++Q   + +G     SA+     +LP +A            LE++VG+DFLPRG
Sbjct: 24  VISLVNRLQDIFSRVGSQ---SAI-----NLPQVAVVGSQSSGKSSVLEALVGRDFLPRG 75

Query: 64  SGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQISS 123
           + I TRRPLVLQL +S E + EY EFLHLP KRF DF+ +R+EIQ ETDRE G  K +S 
Sbjct: 76  NEICTRRPLVLQLVRSSEPADEYGEFLHLPGKRFYDFSDIRREIQAETDREAGDNKGVSD 135

Query: 124 VPIHLSIYSPN 134
             I L I SPN
Sbjct: 136 RQIRLKIVSPN 146


>IMGA|Medtr2g009740.3 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr02_pseudomolecule_IMGAG_V3
           2202134-2213835 E EGN_Mt090430 20090702
          Length = 362

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 83/131 (63%), Gaps = 8/131 (6%)

Query: 4   LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFLPRG 63
           +ISLVN++Q   + +G     SA+     +LP +A            LE++VG+DFLPRG
Sbjct: 24  VISLVNRLQDIFSRVGSQ---SAI-----NLPQVAVVGSQSSGKSSVLEALVGRDFLPRG 75

Query: 64  SGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQISS 123
           + I TRRPLVLQL +S E + EY EFLHLP KRF DF+ +R+EIQ ETDRE G  K +S 
Sbjct: 76  NEICTRRPLVLQLVRSSEPADEYGEFLHLPGKRFYDFSDIRREIQAETDREAGDNKGVSD 135

Query: 124 VPIHLSIYSPN 134
             I L I SPN
Sbjct: 136 RQIRLKIVSPN 146


>IMGA|Medtr4g121300.1 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr04_pseudomolecule_IMGAG_V3
           28401923-28411225 E EGN_Mt090430 20090702
          Length = 761

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 74/131 (56%), Gaps = 8/131 (6%)

Query: 4   LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFLPRG 63
           +ISLVNK+Q   + +G              LP +A            LE++VG+DFLPRG
Sbjct: 15  VISLVNKLQDIFSRVGSQSTID--------LPQVAVVGCQSSGKSSVLEALVGRDFLPRG 66

Query: 64  SGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQISS 123
           + I TRRPLVLQL        E AEFLHLP + F DF+ +R EIQ ETDRE G  K +S 
Sbjct: 67  NDICTRRPLVLQLVHIPPSKPESAEFLHLPGRTFHDFSQIRAEIQAETDREAGGNKGVSD 126

Query: 124 VPIHLSIYSPN 134
             I L I+SPN
Sbjct: 127 KQIRLKIFSPN 137


>IMGA|Medtr4g121440.1 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr04_pseudomolecule_IMGAG_V3
           28476356-28485660 E EGN_Mt090430 20090702
          Length = 766

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 74/131 (56%), Gaps = 8/131 (6%)

Query: 4   LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFLPRG 63
           +ISLVNK+Q   + +G              LP +A            LE++VG+DFLPRG
Sbjct: 15  VISLVNKLQDIFSRVGSQSTID--------LPQVAVVGCQSSGKSSVLEALVGRDFLPRG 66

Query: 64  SGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQISS 123
           + I TRRPLVLQL        E AEFLHLP + F DF+ +R EIQ ETDRE G  K +S 
Sbjct: 67  NDICTRRPLVLQLVHIPPSKPESAEFLHLPGRTFHDFSQIRAEIQAETDREAGGNKGVSD 126

Query: 124 VPIHLSIYSPN 134
             I L I+SPN
Sbjct: 127 KQIRLKIFSPN 137