Jatropha Genome Database

JcCB0034881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034881.10 + phase: 1 /partial
         (208 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g009210.1 UDP-glucose 4-epimerase chr05_pseudomolecul...   379   e-106
IMGA|Medtr5g009200.1 UDP-glucose 4-epimerase chr05_pseudomolecul...   364   e-101
IMGA|Medtr5g009200.2 UDP-glucose 4-epimerase chr05_pseudomolecul...   362   e-101
IMGA|Medtr5g009210.2 UDP-glucose 4-epimerase chr05_pseudomolecul...   289   5e-79
IMGA|Medtr4g137730.1 UDP-glucose 4-epimerase chr04_pseudomolecul...   154   3e-38
IMGA|Medtr4g137730.2 UDP-glucose 4-epimerase chr04_pseudomolecul...   154   3e-38
IMGA|Medtr3g005330.1 UDP-glucose 4-epimerase chr03_pseudomolecul...    49   2e-06

>IMGA|Medtr5g009210.1 UDP-glucose 4-epimerase
           chr05_pseudomolecule_IMGAG_V3 1959897-1955975 F
           EGN_Mt090430 20090702
          Length = 392

 Score =  379 bits (972), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 192/217 (88%), Gaps = 10/217 (4%)

Query: 1   TVYGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPS 60
           TVYGWPKEVPCTEEFPL A NPYGRTKL IEEICRD+ ++D +WKI+LLRYFNPVGAHPS
Sbjct: 175 TVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVNRADPDWKIMLLRYFNPVGAHPS 234

Query: 61  GHIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGNDYSTKDGTGVRDYIHVIDLADGHIAA 120
           G+IGEDP GIPNNLMP++QQVAVGRRP LTVFGNDY T DGTGVRDYIHV+DLADGHIAA
Sbjct: 235 GYIGEDPHGIPNNLMPFIQQVAVGRRPALTVFGNDYKTVDGTGVRDYIHVVDLADGHIAA 294

Query: 121 LRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDAEIVYASTDK 180
           LRKL +A IGC+VYNLGTGKGTSVLEMV AFEKASGKKIPLV AGRRPGDAEIVYAST K
Sbjct: 295 LRKLEEADIGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGRRPGDAEIVYASTKK 354

Query: 181 AERELNWK----------DQWNWASKNPYGYGSPENS 207
           AEREL WK          DQWNWASKNPYGYGSP+++
Sbjct: 355 AERELKWKAKYGIDEMCRDQWNWASKNPYGYGSPDST 391


>IMGA|Medtr5g009200.1 UDP-glucose 4-epimerase
           chr05_pseudomolecule_IMGAG_V3 1955431-1951450 E
           EGN_Mt090430 20090702
          Length = 349

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/217 (78%), Positives = 191/217 (88%), Gaps = 10/217 (4%)

Query: 1   TVYGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPS 60
           TVYGWPKEVPCTEEFPL A NPYGRTKL IEEICRD+++++ +WKIIL RYFNPVGAHPS
Sbjct: 132 TVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVHRAEPDWKIILSRYFNPVGAHPS 191

Query: 61  GHIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGNDYSTKDGTGVRDYIHVIDLADGHIAA 120
           G+IGEDPRG+PNNLMP++QQVAVGRRP LT+FGNDY+T DGTGVRD+IHV+DLADGHIAA
Sbjct: 192 GYIGEDPRGVPNNLMPFIQQVAVGRRPALTIFGNDYNTVDGTGVRDFIHVVDLADGHIAA 251

Query: 121 LRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDAEIVYASTDK 180
           L KL +A IGCEVYNLGTGKGTSV E+V AFE ASGKKIPLV AGRRPGDAEIVYAST+K
Sbjct: 252 LLKLEEADIGCEVYNLGTGKGTSVSEIVRAFEHASGKKIPLVKAGRRPGDAEIVYASTEK 311

Query: 181 AERELNWK----------DQWNWASKNPYGYGSPENS 207
           AEREL WK          DQWNWASKNPYGYG P+++
Sbjct: 312 AERELKWKAKYGIDDMCRDQWNWASKNPYGYGPPDST 348


>IMGA|Medtr5g009200.2 UDP-glucose 4-epimerase
           chr05_pseudomolecule_IMGAG_V3 1955431-1951450 E
           EGN_Mt090430 20090702
          Length = 286

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/217 (78%), Positives = 191/217 (88%), Gaps = 10/217 (4%)

Query: 1   TVYGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPS 60
           TVYGWPKEVPCTEEFPL A NPYGRTKL IEEICRD+++++ +WKIIL RYFNPVGAHPS
Sbjct: 69  TVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVHRAEPDWKIILSRYFNPVGAHPS 128

Query: 61  GHIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGNDYSTKDGTGVRDYIHVIDLADGHIAA 120
           G+IGEDPRG+PNNLMP++QQVAVGRRP LT+FGNDY+T DGTGVRD+IHV+DLADGHIAA
Sbjct: 129 GYIGEDPRGVPNNLMPFIQQVAVGRRPALTIFGNDYNTVDGTGVRDFIHVVDLADGHIAA 188

Query: 121 LRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDAEIVYASTDK 180
           L KL +A IGCEVYNLGTGKGTSV E+V AFE ASGKKIPLV AGRRPGDAEIVYAST+K
Sbjct: 189 LLKLEEADIGCEVYNLGTGKGTSVSEIVRAFEHASGKKIPLVKAGRRPGDAEIVYASTEK 248

Query: 181 AERELNWK----------DQWNWASKNPYGYGSPENS 207
           AEREL WK          DQWNWASKNPYGYG P+++
Sbjct: 249 AERELKWKAKYGIDDMCRDQWNWASKNPYGYGPPDST 285


>IMGA|Medtr5g009210.2 UDP-glucose 4-epimerase
           chr05_pseudomolecule_IMGAG_V3 1959897-1955975 F
           EGN_Mt090430 20090702
          Length = 172

 Score =  289 bits (740), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 141/171 (82%), Positives = 151/171 (88%), Gaps = 10/171 (5%)

Query: 47  ILLRYFNPVGAHPSGHIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGNDYSTKDGTGVRD 106
           +LLRYFNPVGAHPSG+IGEDP GIPNNLMP++QQVAVGRRP LTVFGNDY T DGTGVRD
Sbjct: 1   MLLRYFNPVGAHPSGYIGEDPHGIPNNLMPFIQQVAVGRRPALTVFGNDYKTVDGTGVRD 60

Query: 107 YIHVIDLADGHIAALRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGR 166
           YIHV+DLADGHIAALRKL +A IGC+VYNLGTGKGTSVLEMV AFEKASGKKIPLV AGR
Sbjct: 61  YIHVVDLADGHIAALRKLEEADIGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGR 120

Query: 167 RPGDAEIVYASTDKAERELNWK----------DQWNWASKNPYGYGSPENS 207
           RPGDAEIVYAST KAEREL WK          DQWNWASKNPYGYGSP+++
Sbjct: 121 RPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGSPDST 171


>IMGA|Medtr4g137730.1 UDP-glucose 4-epimerase
           chr04_pseudomolecule_IMGAG_V3 33993450-33997060 E
           EGN_Mt090430 20090702
          Length = 397

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 117/216 (54%), Gaps = 17/216 (7%)

Query: 3   YGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPSGH 62
           YG P+++P TE  P   +NPYG+ K   E+I  D  K +S+  +++LRYFN +G+ P G 
Sbjct: 182 YGEPEKMPITEVTPQVPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGR 240

Query: 63  IGEDPR---GIPNNLMPYVQQVAVGRRPHLTVFGNDYSTKDGTGVRDYIHVIDLADGHIA 119
           +GE PR        +       A G  P L V G DY T DGT +RDYI V DL D H+ 
Sbjct: 241 LGEAPRPELREQGRISGACFDAARGIIPGLKVRGTDYKTSDGTCIRDYIDVTDLVDAHVK 300

Query: 120 ALRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDAEIVYASTD 179
           AL K   AK+G  +YN+GTGKG+SV E V A +KA+G  I +    RRPGD   VY+   
Sbjct: 301 ALEKAVPAKVG--IYNVGTGKGSSVKEFVEACKKATGVNIKVEFLPRRPGDYAEVYSDPT 358

Query: 180 KAERELNWKDQ-----------WNWASKNPYGYGSP 204
           K  REL W  Q           W W   +  GYG P
Sbjct: 359 KINRELKWSAQRTNLEESLRTAWRWQKSHHDGYGIP 394


>IMGA|Medtr4g137730.2 UDP-glucose 4-epimerase
           chr04_pseudomolecule_IMGAG_V3 33992473-33997060 E
           EGN_Mt090430 20090702
          Length = 266

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 117/216 (54%), Gaps = 17/216 (7%)

Query: 3   YGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPSGH 62
           YG P+++P TE  P   +NPYG+ K   E+I  D  K +S+  +++LRYFN +G+ P G 
Sbjct: 51  YGEPEKMPITEVTPQVPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGR 109

Query: 63  IGEDPR---GIPNNLMPYVQQVAVGRRPHLTVFGNDYSTKDGTGVRDYIHVIDLADGHIA 119
           +GE PR        +       A G  P L V G DY T DGT +RDYI V DL D H+ 
Sbjct: 110 LGEAPRPELREQGRISGACFDAARGIIPGLKVRGTDYKTSDGTCIRDYIDVTDLVDAHVK 169

Query: 120 ALRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDAEIVYASTD 179
           AL K   AK+G  +YN+GTGKG+SV E V A +KA+G  I +    RRPGD   VY+   
Sbjct: 170 ALEKAVPAKVG--IYNVGTGKGSSVKEFVEACKKATGVNIKVEFLPRRPGDYAEVYSDPT 227

Query: 180 KAERELNWKDQ-----------WNWASKNPYGYGSP 204
           K  REL W  Q           W W   +  GYG P
Sbjct: 228 KINRELKWSAQRTNLEESLRTAWRWQKSHHDGYGIP 263


>IMGA|Medtr3g005330.1 UDP-glucose 4-epimerase
          chr03_pseudomolecule_IMGAG_V3 238901-240046 H
          EGN_Mt090430 20090702
          Length = 58

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 43 EWKIILLRYFNPVGAHPSGHIGEDPRGIPNNLMP 76
          +W I+ LR F PVGA+ SG +G++P GIPNNL P
Sbjct: 6  KWIIVFLRCFKPVGAYKSGLLGKNPMGIPNNLGP 39