Jatropha Genome Database

JcCB0034461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034461.10 - phase: 0 
         (186 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g098930.1 hypothetical protein chr01_pseudomolecule_I...    72   1e-13
IMGA|Medtr7g139650.1 hypothetical protein chr07_pseudomolecule_I...    52   1e-07

>IMGA|Medtr1g098930.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 20100950-20100492 H
           EGN_Mt090430 20090702
          Length = 152

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 83/186 (44%), Gaps = 40/186 (21%)

Query: 1   MDQREDQFQTKGICSRLYNFMTKTLAIYALKSVKLGHPLHKNFARARTRP---PCNSD-- 55
           MDQRE   Q  GIC +LY F+TKTLA  ALK+V LG      ++   T P    C +D  
Sbjct: 1   MDQRELHLQHLGICYKLYYFITKTLASQALKTVTLG--CSARYSSTSTAPRGSDCEADKV 58

Query: 56  LMVQPVTQEETPFEGVEQTLNIKNSDPFFPNSSSINGLKQEGKELQEVQENNSNFNGEKI 115
           L +     +++P   V++   +K      P   S+                         
Sbjct: 59  LRLGIPCNKDSPCTKVDEM--VKEGTTRLPKRISL------------------------- 91

Query: 116 EAKVPKKVVSINDRVEEIDTXXXXXXXXXXXENLTSFEQ-EEEEPKPLKSILKVGSFSGE 174
                KK VSI D VE+I             +  +S +Q EEEEPKPL+SILKVGS   +
Sbjct: 92  -----KKSVSICDNVEQILPNKKIKKRSKSFQKSSSLDQEEEEEPKPLRSILKVGSDLND 146

Query: 175 KSNSFV 180
           +SNS  
Sbjct: 147 QSNSIC 152


>IMGA|Medtr7g139650.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 33457704-33459636 E
           EGN_Mt090430 20090702
          Length = 134

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 16/135 (11%)

Query: 1   MDQREDQFQTKGICSRLYNFMTKTLAIYALKSVKLGHPLHKNFARARTRPPCNSDLMVQP 60
           MD++E   +   IC +LY+F+ K L+  A K+V LG     N+  +    P  SD MV+ 
Sbjct: 1   MDKKELHLEHVNICYKLYDFIMKILSAQASKTVTLGRS--SNYGSSSLGVPI-SDKMVRH 57

Query: 61  VTQEETPFEGVEQTLNIKNSDPFFPNSSSINGLKQEGKELQEVQENN--SNFNGEKIEAK 118
           V    TP  G+     ++ S  FF +    N L  + + ++E  ENN   N   E++  +
Sbjct: 58  V----TPCIGLNSN-ELRKSKYFFGD----NRLSPQTEHVEE--ENNLCRNIVDEELCHQ 106

Query: 119 VPKKVVSINDRVEEI 133
             KK+VSIND  EEI
Sbjct: 107 ASKKMVSINDMAEEI 121