Jatropha Genome Database
- JcCB0034131.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0034131.10 + phase: 0 /TE
(1349 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 281 2e-75
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 273 5e-73
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 270 4e-72
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 269 8e-72
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 253 4e-67
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 204 2e-52
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 181 2e-45
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 180 4e-45
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 169 6e-42
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 162 9e-40
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 160 4e-39
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 155 1e-37
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 152 8e-37
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 128 2e-29
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 127 5e-29
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 119 1e-26
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 109 8e-24
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 109 1e-23
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 102 1e-21
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 100 8e-21
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 99 2e-20
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 97 6e-20
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 89 1e-17
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 79 1e-14
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 77 5e-14
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 74 7e-13
IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule... 68 2e-11
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 63 8e-10
IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H f... 62 1e-09
IMGA|Medtr4g104320.1 hypothetical protein chr04_pseudomolecule_I... 60 8e-09
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 59 2e-08
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 57 5e-08
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 57 5e-08
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 57 5e-08
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 53 9e-07
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 53 9e-07
IMGA|Medtr8g128700.1 Integrase, catalytic region chr08_pseudomol... 53 1e-06
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 53 1e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 281 bits (719), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/409 (37%), Positives = 241/409 (58%), Gaps = 17/409 (4%)
Query: 822 ELSIDKDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKT 881
L +P ++ +E + W AM+ E+ ++ WD+V+LP K +GC+W++K
Sbjct: 732 SLQTTPEPTTY---VEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKV 788
Query: 882 KWDFKGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIILALVAHYDLELHQMDV 941
K + G+IERYKARLVAKGYTQ +G+DY ET+SPV+K ++R+++AL + ++ LHQ+DV
Sbjct: 789 KHNADGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDV 848
Query: 942 KTTFLNGDLEKELYMDQPEGFVVTXKENLVCELKKSIYGLKQASRQWYLKFNNTITSYGF 1001
FL+G+L++++YM P G + K + VC+LKKS+YGLKQASRQWY K + + +
Sbjct: 849 NNAFLHGELQEDVYMILPPGINIA-KPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHY 907
Query: 1002 IENTIDQCICMKVSGSKLIMLALYVDDILLAANDVGLLHDVNGFLSENFEMKDMGEASFV 1061
I+ + D + +K S +L +YVDDI+LA + ++ L +F++KD+G+ +
Sbjct: 908 IQASSDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYF 967
Query: 1062 IGIEIFRDRSQGLLKLSQRAYIDKVLERFRMEKYSTGIVPI-XKGDRFSKMQCCKNDLER 1120
+GIE+ S+ + L QR Y +L + G PI D +K+ +D
Sbjct: 968 LGIEV--AHSKLGISLYQRKYCLDLLH----DSGHIGSKPISTPSDPSTKLH---HDTS- 1017
Query: 1121 NEMDSIP-YASVVGSLMYAQTCTRLDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTK 1179
D IP Y +VG L+Y TR DI+F L ++ SNP + H AA + LRYL+
Sbjct: 1018 TPYDDIPAYRRLVGRLLYLNN-TRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCP 1076
Query: 1180 DHILTYRKSSHLEVVGYSDSDYAGCVDSRKSTFGYLSLLAGGAVSWKTE 1228
L + ++S L + G+SD+D+AGC+D+RKS G L +SW+T+
Sbjct: 1077 GKGLFFPRNSSLTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTK 1125
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 544 KVVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAERWNRTLMKM 603
K +R D G E+ K F SHGI + + TPQQNG ER ++ ++ +
Sbjct: 459 KTIRIDNGPEFMLK------------DFYASHGIIHHKSCVETPQQNGRVERKHQHILNV 506
Query: 604 VRSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVP-KTPYELWTRRKPNLRHLHVWGCPA 662
VR++L +P + W A+ A +L+NRV + + ++PY + + P+L V+GC
Sbjct: 507 VRALLFQSKLPPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGCLC 566
Query: 663 KVTIYNPHEKKLDTRTVSGFFIGYLKSQKG 692
+ H KL +R F+GY KG
Sbjct: 567 YASTLQNHRTKLQSRARKSIFLGYQSGYKG 596
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 273 bits (697), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 228/400 (57%), Gaps = 26/400 (6%)
Query: 837 ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKWDFKGNIERYKARL 896
E + E W AM+ E+Q++ W+ V+LP K +GC+WVFK K G+IERYKARL
Sbjct: 872 EANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIERYKARL 931
Query: 897 VAKGYTQKDGIDYKETFSPVSKKDSLRIILALVAHYDLELHQMDVKTTFLNGDLEKELYM 956
VAKGYTQ +G+DY +TFSPV+K ++R+I+AL + LHQ+DV FL+GDL++ +YM
Sbjct: 932 VAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYM 991
Query: 957 DQPEGFVVTXKENLVCELKKSIYGLKQASRQWYLKFNNTITSYGFIENTIDQCICMKVSG 1016
P G N VC+L KS+YGLKQASR+WY K + + + + + D + K +G
Sbjct: 992 TLPPGISAK-HSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTG 1050
Query: 1017 SKLIMLALYVDDILLAANDVGLLHDVNGFLSENFEMKDMGEASFVIGIEIFRDRSQGLLK 1076
+ +L +YVDDI+LA + + + L F++KD+G+ F +G+E+ SQ +
Sbjct: 1051 TSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLGLEV--AHSQLGIS 1108
Query: 1077 LSQRAYIDKVLERFRMEKYSTGIVPIXKGDRFSKMQCCKND--LERNEMDSIPYASV--- 1131
L Q+ Y +L G SK +D L+ ++ ++PY +
Sbjct: 1109 LCQKKYCLDLLAD--------------SGTIGSKPASTPSDPSLKLHKDGALPYEDIPSY 1154
Query: 1132 ---VGSLMYAQTCTRLDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDHILTYRKS 1188
+G L+Y T TR DI++ L ++ S P H AA +VLRYL+ L + ++
Sbjct: 1155 RRLIGRLLYLNT-TRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRN 1213
Query: 1189 SHLEVVGYSDSDYAGCVDSRKSTFGYLSLLAGGAVSWKTE 1228
S L++ GYSD+D+AGC+D+R+S G L +SW+T+
Sbjct: 1214 SPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTK 1253
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 150/323 (46%), Gaps = 36/323 (11%)
Query: 381 GSGTLIDGLYHFNLHAEFIESLF----NVEHNIGNKRSAHNEC--SAFLWHQRLGNISKE 434
G + GLY + ++F + N N + N C A LWH RLG++S +
Sbjct: 446 GLAKQVAGLYRYTPPSDFSSTSLMHSPNKSCNFSSISCNSNNCIPVAALWHFRLGHLSNQ 505
Query: 435 RILRLVKGEILPQLDFTDWDVCIDCIKGKXIKHTLKNPATRSSELLELIHTDIYGPFDVP 494
R++++ + P + + DVC C K + + +S EL+H DI+GP +
Sbjct: 506 RMIKM--SHLYPSIVHNNRDVCDICHFSKQKHLPFSSSLSHASTNFELLHFDIWGPISIS 563
Query: 495 SWGGEKYFITFIDDFSRYGYVYLLHEKSQSVDILEIFINEVERQLNRKVKVVRSDRGGEY 554
S G +YF+T +DD SR+ ++ LL KS+ ++ FI + Q + K VRSD G E+
Sbjct: 564 SVHGHRYFLTILDDHSRFLWIILLKSKSEVSLHVKNFILMIRTQFHVTPKYVRSDNGPEF 623
Query: 555 YGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAERWNRTLMKMVRSMLNNCTVP 614
F SHGI + + TPQQNG ER ++ ++ + R++L +P
Sbjct: 624 L------------LNDFYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLP 671
Query: 615 LSLWMDALKTAAYLLNRVPSKAVP-KTPYELWTRRKPNLRHLHVWGCPAKVTIYNPHEKK 673
S W A+ A +L+NRVP+ + ++PY + + P+++ + K
Sbjct: 672 PSFWSYAILHAVFLINRVPTHVLHNQSPYHVLFHKLPDIQLF---------------KSK 716
Query: 674 LDTRTVSGFFIGYLKSQKGTDLL 696
L R F+GY KG L
Sbjct: 717 LQPRARKSLFLGYKSGYKGYHLF 739
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 270 bits (689), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 236/409 (57%), Gaps = 17/409 (4%)
Query: 822 ELSIDKDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKT 881
L +P S+ +A + D W +AM+ E+Q++ W LV+LP K +GC+W++K
Sbjct: 886 SLHTQPEPKSYAEASKLDC---WKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKV 942
Query: 882 KWDFKGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIILALVAHYDLELHQMDV 941
K+ G +ERYKARLVAKGY Q +G+DY +T+SPV+K ++R+++AL + + LHQ+DV
Sbjct: 943 KFHADGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDV 1002
Query: 942 KTTFLNGDLEKELYMDQPEGFVVTXKENLVCELKKSIYGLKQASRQWYLKFNNTITSYGF 1001
FL+GDL++++YM P G + + K N VC+L KS+YGLKQASR+WY K + + +
Sbjct: 1003 NNAFLHGDLQEDVYMMVPPG-IKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHY 1061
Query: 1002 IENTIDQCICMKVSGSKLIMLALYVDDILLAANDVGLLHDVNGFLSENFEMKDMGEASFV 1061
+ T D + +K + + +L +YVDDI+LA N + + L F++KD+G+ +
Sbjct: 1062 TQATSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYF 1121
Query: 1062 IGIEIFRDRSQGLLKLSQRAYIDKVLERFRMEKYSTGIVPI-XKGDRFSKMQCCKNDLER 1120
+GIE+ S+ + L QR Y +L S G PI D K+ +
Sbjct: 1122 LGIEV--AHSKLGISLCQRKYCLDLLADIG----SLGSKPISTPSDSSIKLHLDSS---- 1171
Query: 1121 NEMDSIPYA-SVVGSLMYAQTCTRLDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTK 1179
+ + +P +VG L+Y TR DI+F L ++ S P H AA +VL+YL+
Sbjct: 1172 SPFEDVPACRRLVGRLLYLNN-TRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCP 1230
Query: 1180 DHILTYRKSSHLEVVGYSDSDYAGCVDSRKSTFGYLSLLAGGAVSWKTE 1228
L + +SS L + G+SD+D+AGC+D+R+S G L +SW+T+
Sbjct: 1231 GKGLFFPRSSSLNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTK 1279
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 105/431 (24%), Positives = 172/431 (39%), Gaps = 73/431 (16%)
Query: 280 WWLDSGATTHVSHIIXGFLS---IQPINETEKFLFMGNRMKARIEGIGTYRLILDTGCXL 336
W +DSGA H+ I F S I+P+N + + N + GT
Sbjct: 387 WLIDSGANEHICCDITFFSSFYRIKPVNVS-----LPNGTIVLVHYAGTVSF----NSKF 437
Query: 337 DLEKCLYVPECARNLVSVGRLD---NVGFSFKICNGVFSLYKHKYYYGSGTLIDGLYHFN 393
L LY P NL+SV +L F F + + + G +DGLY F
Sbjct: 438 YLNHVLYSPNFLLNLISVAKLCESLTCFFHFSLDKCLIQDQQSLKMIGLAKQMDGLYKFY 497
Query: 394 LHAEFIE-SLFNVEHNIGNK--RSAHNECSAF-----LWHQRLGNISKERILRLVKGEIL 445
+ LF+ N S+ N+ F LWH RLG++SK+R+ L +
Sbjct: 498 PSSSSCNLELFSSPTKYCNVVLPSSCNKIPTFVPSDTLWHFRLGHLSKQRLQTL--SLLY 555
Query: 446 PQLDFTDWDVCIDCIKGKXIKHTLKNPATRSSELLELIHTDIYGPFDVPSWGGEKYFITF 505
P + + +C D+ + K+
Sbjct: 556 PSIKIDNKAIC-----------------------------------DLCHFAKHKHLPFT 580
Query: 506 IDDFSRYGYVYLLHEKSQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCP 565
+D SR+ ++ LL K++ ++ FI ++ + K +R+D G E+
Sbjct: 581 SNDHSRFLWIILLKTKAEVSTHVKNFITMIKNHFHTTPKFIRTDNGPEFM---------- 630
Query: 566 GPFAKFLESHGICAXYTMLGTPQQNGVAERWNRTLMKMVRSMLNNCTVPLSLWMDALKTA 625
+ SHGI + + TPQQNG ER ++ ++ + R++L +P + W A++ A
Sbjct: 631 --LSTLYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPAYWCYAIQHA 688
Query: 626 AYLLNRVPSKAV-PKTPYELWTRRKPNLRHLHVWGCPAKVTIYNPHEKKLDTRTVSGFFI 684
+L+NRVP+ + ++PY + + P+ V+GC + H KL R FI
Sbjct: 689 VFLINRVPTPTLNNQSPYFVLHHKLPDSSLFKVFGCLCYASTLQSHTTKLKHRARKSIFI 748
Query: 685 GYLKSQKGTDL 695
GY KG L
Sbjct: 749 GYQSGYKGFTL 759
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 269 bits (687), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 238/422 (56%), Gaps = 19/422 (4%)
Query: 808 ISSDYVVYSLEHECELSIDKDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELP 867
+SS + ++L L +P ++ +A + D W AM+ E+ ++ + W LV+LP
Sbjct: 867 LSSSHCAFALS----LDSHTEPTTYAEASKFDC---WKQAMQVELSALENTGTWKLVDLP 919
Query: 868 EGSKQVGCKWVFKTKWDFKGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIILA 927
K + C+W++K K G+IERYKARLVAKGY Q +G+DY +T+SPV+K ++R I+A
Sbjct: 920 PNVKPIVCRWIYKIKHHADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIA 979
Query: 928 LVAHYDLELHQMDVKTTFLNGDLEKELYMDQPEGFVVTXKENLVCELKKSIYGLKQASRQ 987
L + +HQ+DV FL+GDL++++YM P+G + K N VC+L KS+YGLKQASR+
Sbjct: 980 LAYMNNWHIHQLDVNNAFLHGDLQEDVYMIVPQGITPS-KSNQVCKLIKSLYGLKQASRK 1038
Query: 988 WYLKFNNTITSYGFIENTIDQCICMKVSGSKLIMLALYVDDILLAANDVGLLHDVNGFLS 1047
WY K + + + ++++T D + +K + + L +YVDD+++ + D+ L
Sbjct: 1039 WYEKLTSLLVHHHYLQSTSDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILH 1098
Query: 1048 ENFEMKDMGEASFVIGIEIFRDRSQGLLKLSQRAYIDKVLERFRMEKYSTGIVPIXKGDR 1107
E+KD+G+ + +G+E+ SQG + L QR Y +L P
Sbjct: 1099 SALEIKDLGQLKYFLGLEVAHS-SQG-ISLCQRKYCLDLLTDIGFLAAKPASTP------ 1150
Query: 1108 FSKMQCCKNDLERNEMDSIP-YASVVGSLMYAQTCTRLDISFAVGMLGRYQSNPGMDHWK 1166
S C + IP Y ++G L+Y T TR I+FA L ++ ++P H+
Sbjct: 1151 -SDPSCKLHADGGPPFSDIPSYRRLIGRLIYL-TNTRPYITFATQQLSQFLNSPTEKHYI 1208
Query: 1167 AAKKVLRYLQGTKDHILTYRKSSHLEVVGYSDSDYAGCVDSRKSTFGYLSLLAGGAVSWK 1226
AA ++LRYL+ + L + + S L + GYSD+D+AGC+DSR+S G L +SWK
Sbjct: 1209 AATRILRYLKKSPGQGLFFPRDSSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWK 1268
Query: 1227 TE 1228
T+
Sbjct: 1269 TK 1270
Score = 136 bits (342), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 115/418 (27%), Positives = 181/418 (43%), Gaps = 56/418 (13%)
Query: 280 WWLDSGATTHVSHIIXGFLSIQPINETEKFLFMGNRMKARIEGIGTYRLILDTGCXLDLE 339
W+LDSGA H+ F S IN K + + N +E GT +E
Sbjct: 381 WFLDSGANEHIVSSTHWFTSFHKIN--PKPVNLPNGTSVLVEYAGTIHFTPH----FYIE 434
Query: 340 KCLYVPECARNLVSVGRLDNVGFSFKICNGVFSLYKHKYYYGSGTLIDGLYHFNLHAEFI 399
LY P NL+S+ FK+C+ SL+ + ++ + +LH++ +
Sbjct: 435 DVLYSPSFTLNLISI---------FKVCS---SLHCYASFHDKKCFLQ-----DLHSQKM 477
Query: 400 ESLFNVEHNIGNKRSAHNECSAFLWHQRLGNISKERILRLVKGEILPQLDFTDWDVCIDC 459
L + LG++S +R+ + + P L + C C
Sbjct: 478 IGLGEQVRGL------------------LGHVSNKRLNHM--SHLYPTLTVDNHATCDIC 517
Query: 460 IKGKXIKHTLKNPATRSSELLELIHTDIYGPFDVPSWGGEKYFITFIDDFSRYGYVYLLH 519
K K + + +S EL+H DI+GP V S +YF+T +DD+S + ++ LL
Sbjct: 518 QFAKQKKLSFPTSVSVASSKFELLHFDIWGPLAVTSIHNHRYFLTILDDYSIFFWIVLLK 577
Query: 520 EKSQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICA 579
K + ++ FIN + Q + KVVRSD G E+ F S GI
Sbjct: 578 SKYEVSQHVKNFINLIHTQYHITPKVVRSDNGPEFL------------LNSFYASKGIVH 625
Query: 580 XYTMLGTPQQNGVAERWNRTLMKMVRSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVP- 638
+ + TPQQNG ER ++ ++ + R++L +P S W AL A +++NRV S +
Sbjct: 626 HKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPSSYWSYALLHAIFIINRVTSPTLHN 685
Query: 639 KTPYELWTRRKPNLRHLHVWGCPAKVTIYNPHEKKLDTRTVSGFFIGYLKSQKGTDLL 696
K+PY+L P+++ V+G T H KL R F+GY KG LL
Sbjct: 686 KSPYQLLHGTIPDVQTFKVFGSLCYSTTLQSHRTKLSARARKTVFLGYAVGYKGYVLL 743
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 253 bits (646), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 146/412 (35%), Positives = 222/412 (53%), Gaps = 30/412 (7%)
Query: 765 NNISNPQNDHINDEPVNNEQFTNDQVVSQEIALWRSQRQRRPAISSDYVVYSLEHECELS 824
+ +SN Q + P+N FT VS ++ + SQ + ++ H+CE
Sbjct: 289 STVSNSQPPQPHSLPLN-ALFTLKHYVSPDVFSFDSQS----------FIMNISHDCE-- 335
Query: 825 IDKDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKWD 884
P S++ E W AM +E ++ DN W L LP+ K VGC+WV+K K
Sbjct: 336 ----PNSYE---EASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHK 388
Query: 885 FKGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIILALVAHYDLELHQMDVKTT 944
G++ERYKARLV KGYTQ GIDY ETFSPV K ++R ++ A +HQ+DV
Sbjct: 389 ADGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNA 448
Query: 945 FLNGDLEKELYMDQPEGFVVTXKENLVCELKKSIYGLKQASRQWYLKFNNTITSYGFIEN 1004
FL+GDL +E+YMD P G + T ++LVC+L KS+YGLKQASRQWY K + + G+ +
Sbjct: 449 FLHGDLHEEVYMDIPPG-LATPHKDLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHS 507
Query: 1005 TIDQCICMKVSGSKLIMLALYVDDILLAANDVGLLHDVNGFLSENFEMKDMGEASFVIGI 1064
D + K G+ + L +YVDDILL D + ++ FL F++KD+G + +G+
Sbjct: 508 PHDYSLFYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGL 567
Query: 1065 EIFRDRSQGLLKLSQRAYIDKVLERFRMEKYSTGIVPIXKGDRFSKMQCCKNDLERNEMD 1124
E+ + G+L +SQR ++ +L+ F + + P+ + + D D
Sbjct: 568 EVLY-KDDGIL-VSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLD------D 619
Query: 1125 SIPYASVVGSLMYAQTCTRLDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQ 1176
Y ++G L + T TRLD+++ V +L +Y +P H AA +LRYL+
Sbjct: 620 PTYYRKLIGKLNFL-THTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLK 670
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 10/154 (6%)
Query: 472 PATRSSE-LLELIHTDIYGPFDVPSWGGEKYFITFIDDFSRYGYVYLLHEKSQSVDILEI 530
P T ++ + EL+H DI+GP+ + KYFIT +DDFS+ + LL KS + +L+
Sbjct: 11 PKTHTTTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSCKSNAFHVLKA 70
Query: 531 FINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQN 590
FI VE Q + VK +RSD G E+ NE F +S GI + TPQQN
Sbjct: 71 FILMVENQFSTTVKTIRSDNGLEFTS--NET-------TLFFQSKGIIHQKSCPYTPQQN 121
Query: 591 GVAERWNRTLMKMVRSMLNNCTVPLSLWMDALKT 624
GV ER ++ +++ R++L +P+ W + +T
Sbjct: 122 GVVERKHKFILETARALLFQSKLPVKYWSEFHRT 155
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 180/302 (59%), Gaps = 12/302 (3%)
Query: 848 MKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKWDFKGNIERYKARLVAKGYTQKDGI 907
M+ E+ ++ W +V+LP K +GC+W+FK K + G+IERYKARLVAKGY Q +G+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 908 DYKETFSPVSKKDSLRIILALVAHYDLELHQMDVKTTFLNGDLEKELYMDQPEGFVVTXK 967
DY +T+SPV+K ++R I+AL + LHQ DV FL+G+L++++YM P G V
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG-VPHSH 119
Query: 968 ENLVCELKKSIYGLKQASRQWYLKFNNTITSYGFIENTIDQCICMKVSGSKLIMLALYVD 1027
++ VC+L KS+YGL+QAS +WY K N + S G+ + D + +K + S +L +YVD
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVD 179
Query: 1028 DILLAANDVGLLHDVNGFLSENFEMKDMGEASFVIGIEIFRDRSQGLLKLSQRAYIDKVL 1087
D++LA + + + + G L + F++KD+G+ + +G+E+ +S + L QR Y +L
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSG--ISLCQRKYCLDLL 237
Query: 1088 ERFRMEKYSTGIVPI-XKGDRFSKMQCCKNDLERNEMDSIPYASVVGSLMYAQTCTRLDI 1146
E + TG P+ D K+ ND + D Y ++G L+Y T TR DI
Sbjct: 238 EDSGL----TGSKPMNTPSDPSIKLH---NDSAPSFPDIPAYRRLIGRLLYLNT-TRPDI 289
Query: 1147 SF 1148
++
Sbjct: 290 TY 291
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/423 (31%), Positives = 201/423 (47%), Gaps = 28/423 (6%)
Query: 280 WWLDSGATTHVSHIIXGFLSIQPINETEKFLFMGNRMKARIEGIGTYRLILDTGCXLDLE 339
W +DSGA+ H+ I F S PI L GN A+ G + L
Sbjct: 392 WIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIA------R 445
Query: 340 KCLYVPECARNLVSVGRL---DNVGFSFKICNGVFSLYKHKYYYGSGTLIDGLYHFNLHA 396
LYV E NL+SV +L +N +F + G G LI+GLY NL +
Sbjct: 446 NVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGS 505
Query: 397 EFIESLFNVEHNIGNKRSAHNEC---SAFLWHQRLGNISKERILRLVKGEILPQLDFTDW 453
+ + S FN + I +S+ + LWH RLG++S +R+LR+ + P +
Sbjct: 506 Q-VFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRMQQH--FPCIKVDSN 562
Query: 454 DVCIDCIKGKXIKHTLKNPATRSSELLELIHTDIYGPFDVPSWGGEKYFITFIDDFSRYG 513
VC C + K K ++S ELIH DI+GP S G KYFIT +DD+SR+
Sbjct: 563 SVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFT 622
Query: 514 YVYLLHEKSQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLE 573
++ L KS+ ++ FI +E Q N KVK VR+D G E+ F
Sbjct: 623 WIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL------------MPDFYS 670
Query: 574 SHGICAXYTMLGTPQQNGVAERWNRTLMKMVRSMLNNCTVPLSLWMDALKTAAYLLNRVP 633
S GI + + TPQQNG ER ++ ++ + R++L +P W ++ A Y++NR+P
Sbjct: 671 SKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKIFWSYSVLHAIYIINRIP 730
Query: 634 SKAVP-KTPYELWTRRKPNLRHLHVWGCPAKVTIYNPHEKKLDTRTVSGFFIGYLKSQKG 692
+ + K+PY L P+L + V+GC + + + H K D+R F+GY + KG
Sbjct: 731 TPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKG 790
Query: 693 TDL 695
L
Sbjct: 791 AIL 793
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 134/423 (31%), Positives = 203/423 (47%), Gaps = 28/423 (6%)
Query: 280 WWLDSGATTHVSHIIXGFLSIQPINETEKFLFMGNRMKARIEGIGTYRLILDTGCXLDLE 339
W +DSGA+ H+ I F S PI L GN A+ G T+ L
Sbjct: 322 WIVDSGASDHICSSIKNFDSYAPIIPVHIKLPNGNMAIAKFSGTVTFSPGLIA------R 375
Query: 340 KCLYVPECARNLVSVGRL---DNVGFSFKICNGVFSLYKHKYYYGSGTLIDGLYHFNLHA 396
LYV E NL+SV +L +N +F + G G LI+GLY NL +
Sbjct: 376 NVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGS 435
Query: 397 EFIESLFNVEHNIGNKRSAHNEC---SAFLWHQRLGNISKERILRLVKGEILPQLDFTDW 453
+ + S FN + I + +++ + LWH RLG++S +R+LR+ + P +
Sbjct: 436 Q-VFSQFNHQPVIASSQASSSTTFLPQEALWHFRLGHLSNDRLLRMQQH--FPCIKVDSN 492
Query: 454 DVCIDCIKGKXIKHTLKNPATRSSELLELIHTDIYGPFDVPSWGGEKYFITFIDDFSRYG 513
VC C + K K ++S ELIH DI+GP S G KYFIT +DD+SR+
Sbjct: 493 SVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFT 552
Query: 514 YVYLLHEKSQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLE 573
++ L KS+ ++ FI +E Q N KVK VR+D G E+ F
Sbjct: 553 WIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL------------MPDFYS 600
Query: 574 SHGICAXYTMLGTPQQNGVAERWNRTLMKMVRSMLNNCTVPLSLWMDALKTAAYLLNRVP 633
S GI + + TPQQNG ER ++ ++ + R++L +P W ++ A Y++NR+P
Sbjct: 601 SKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKVFWSYSVLHAIYIINRIP 660
Query: 634 SKAVP-KTPYELWTRRKPNLRHLHVWGCPAKVTIYNPHEKKLDTRTVSGFFIGYLKSQKG 692
+ + K+PY L P+L + V+GC + + + H K D+R F+GY + KG
Sbjct: 661 TPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKG 720
Query: 693 TDL 695
L
Sbjct: 721 AIL 723
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 182/392 (46%), Gaps = 68/392 (17%)
Query: 837 ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKWDFKGNIERYKARL 896
E + E W AM+ E+ ++ + W +++ P +K +GC+W++K K + IERYKARL
Sbjct: 297 EANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTIERYKARL 356
Query: 897 VAKGYTQKDGIDYKETFSPVSKKDSLRIILALVAHYDLELHQMDVKTTFLNGDLEKELYM 956
VAKGY Q +G+DY +T+SPV+K ++R L +
Sbjct: 357 VAKGYNQVEGLDYFDTYSPVAKHTTIR--------------------------LASRKWY 390
Query: 957 DQPEGFVVTXKENLVCELKKSIYGLKQASRQWYLKFNNTITSYGFIENTIDQCICMKVSG 1016
++ +V +G KQAS D + +K S
Sbjct: 391 EKLASLLVN-------------HGYKQAS--------------------ADHSLFIKHST 417
Query: 1017 SKLIMLALYVDDILLAANDVGLLHDVNGFLSENFEMKDMGEASFVIGIEIFRDRSQGLLK 1076
++ L +YVDDI+LA N + + L +F++KD+G+ + +G+E+ S+ +
Sbjct: 418 TQFTALLVYVDDIILAGNSLDEFTFIKNILHNSFKIKDLGQLKYFLGLEV--AHSKLGIS 475
Query: 1077 LSQRAYIDKVLERFRMEKYSTGIVPIXKGDRFSKMQCCKNDLERNEMDSIPYASVVGSLM 1136
L QR Y +L + P D K+ +D D Y +VG L+
Sbjct: 476 LCQRKYGLDLLSDTGLLDSKPVATP---SDPSIKLY---HDDSPLYTDIPAYRRLVGRLL 529
Query: 1137 YAQTCTRLDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDHILTYRKSSHLEVVGY 1196
Y TR DI+F L ++ S P H+ AA +VLRYL+ L + +SS + GY
Sbjct: 530 YLN-ATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSSLPYIQGY 588
Query: 1197 SDSDYAGCVDSRKSTFGYLSLLAGGAVSWKTE 1228
SD+D+AGC D+R+S G L +SW+T+
Sbjct: 589 SDADWAGCRDTRRSISGQCFFLGDSLISWRTK 620
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 535 VERQLNRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAE 594
+E Q + K++R+D G E+ +F S GI + + TPQQNG E
Sbjct: 2 IENQFHVTPKIIRTDNGSEFL------------LHEFYASKGILHQRSCVETPQQNGRVE 49
Query: 595 RWNRTLMKMVRSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVPK-TPYELWTRRKPNLR 653
R ++ ++ + R++L +PLS W A A +L+NR+P+ + +PY L P++
Sbjct: 50 RKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDIT 109
Query: 654 HLHVWGCPAKVTIYNPHEKKLDTRTVSGFFIGYLKSQKG 692
V+GC + H KL+TR F+GY KG
Sbjct: 110 TFKVFGCLCYASSLQSHRTKLETRARKSVFLGYKLGFKG 148
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 162 bits (410), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 193/418 (46%), Gaps = 46/418 (11%)
Query: 280 WWLDSGATTHVSHIIXGFLSIQPINETEKFLFMGNRMKARIEGIGTYRLILDTGCXLDLE 339
W+LDSGA H+ + F S IN + + + N +E GT R LE
Sbjct: 379 WFLDSGANEHIVNNTHWFTSFHKINP--RPVNLPNGSSVLVEYAGTIRFTPQ----FYLE 432
Query: 340 KCLYVPECARNLVSVGRLDNVGFSFKICNGVFSLYKHKYYYGSGTLIDGLYHFNLHAEFI 399
LY P NL+S+ FK+C+ SL + ++ L+ +LH++ +
Sbjct: 433 NVLYSPSFTLNLISI---------FKVCS---SLNCYAIFHNKQCLLQ-----DLHSQKM 475
Query: 400 ESLFNVEHNIGNKRSAHNECSAFLWHQRLGNISKERILRLVKGEILPQLDFTDWDVCIDC 459
L G + + SA LWH RLG++S +R++ + ++ P L C C
Sbjct: 476 IGL-------GEQFGVYYSYSA-LWHFRLGHVSPKRLIHM--SQLYPTLTVDVHATCDIC 525
Query: 460 IKGKXIKHTLKNPATRSSELLELIHTDIYGPFDVPSWGGEKYFITFIDDFSRYGYVYLLH 519
K K N + +S EL+H DI+GP + S +YF+T +DD+SRY ++ LL
Sbjct: 526 HFAKQKKLPFSNSISVASIKFELLHFDIWGPLSITSIHNHRYFLTILDDYSRYVWIVLLK 585
Query: 520 EKSQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICA 579
KS+ ++ FIN ++ Q N K VRSD G E+ F S GI
Sbjct: 586 SKSEVSQHVKNFINLIQTQYNITPKTVRSDNGPEFL------------LHSFYASKGIVH 633
Query: 580 XYTMLGTPQQNGVAERWNRTLMKMVRSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVP- 638
+ + TPQQNG ER ++ ++ + R++L +P+S W AL A +++NRV S +
Sbjct: 634 HRSCVETPQQNGRVERKHQHILNVGRALLYQSKLPVSYWSYALLHATFIINRVTSPTLHN 693
Query: 639 KTPYELWTRRKPNLRHLHVWGCPAKVTIYNPHEKKLDTRTVSGFFIGYLKSQKGTDLL 696
K+PY+L P V+G T + H KL R F+GY KG LL
Sbjct: 694 KSPYQLLHDTIPAEHIFKVFGSLCYSTTLHSHRTKLSARARKSVFLGYTVGFKGYVLL 751
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 124/436 (28%), Positives = 213/436 (48%), Gaps = 34/436 (7%)
Query: 256 FEKKGILYVSACFESNLIEVPNNNWWLDSGATTHVSHIIXGFLSIQPINETEKFLFMGNR 315
FE K +L A F+S + + W +D+GAT H + + F S I L G+
Sbjct: 380 FESKSLL---ASFDS---KQNDPGWIVDTGATHHTCYDLNWFTSYSKIETINVNLPNGSV 433
Query: 316 MKARIEGIGTYRLILDTGCXLDLEKCLYVPECARNLVSVGRL---DNVGFSFKICNGVFS 372
++A IG +L D L ++ LY+P+ A NL+SV +L N F+ +
Sbjct: 434 IEACY--IGQVKLSKD----LSIDNVLYLPKFAVNLISVSKLCREQNCKLEFEADICIIQ 487
Query: 373 LYKHKYYYGSGTLIDGLYHFNLHAEFIESLFNVEHNIGNKRSAHNECSAFLWHQRLGNIS 432
G GLY+ S+ N+ + + + LWH RLG++S
Sbjct: 488 EKNTLRKIGLAKEKHGLYYLETDERNKVSVSNISAQV--ELHQKHVPDGVLWHLRLGHLS 545
Query: 433 KERILRLVKG-EILPQLDFTDWDVCIDCIKGKXIKHTLKNPATRSSELLELIHTDIYGPF 491
+R++ + K +P T DVC C + K + + + +++ +L+H DI+GPF
Sbjct: 546 HDRMICMNKMYSYVPVSPHTACDVCQMC-RQKILPFPISSRNAKTA--FDLVHFDIWGPF 602
Query: 492 DVPSWGGEKYFITFIDDFSRYGYVYLLHEKSQSVDILEIFINEVERQLNRKVKVVRSDRG 551
S G KYF+T +DD +R+ ++ +L KS++ ++ F++ VERQ RK+K++RSD G
Sbjct: 603 STTSVHGHKYFLTILDDCTRHVWIVMLKNKSEASYQVKNFVSMVERQFERKIKMIRSDNG 662
Query: 552 GEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAERWNRTLMKMVRSMLNNC 611
E+ +F + GI + + TPQQNG ER ++ ++ + R+++
Sbjct: 663 PEFM------------LREFYDKKGIIHQRSCVYTPQQNGRVERRHQHILNISRALMFQS 710
Query: 612 TVPLSLWMDALKTAAYLLNRVPSKAV-PKTPYELWTRRKPNLRHLHVWGCPAKVTIYNPH 670
+P + W A+ A YL+NR+P+K + K+ YE+ P+L L V+GC + + +
Sbjct: 711 KLPKNFWSYAVLHAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPVN 770
Query: 671 EKKLDTRTVSGFFIGY 686
K D + F+G+
Sbjct: 771 RYKFDPKARKCAFLGF 786
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/470 (27%), Positives = 211/470 (44%), Gaps = 63/470 (13%)
Query: 258 KKGILYVSAC-FESNLIEVPNNNWWLDSGATTHV----SHIIXGFLSIQPINETEKFLFM 312
+ GI +C F N I +W +DSGA HV +H F I+P+ + +
Sbjct: 332 QSGIHSAFSCSFHVNSIP----SWIIDSGANDHVCFSKTHFT-SFYKIKPV-----LVTL 381
Query: 313 GNRMKARIEGIGTYRLILDTGCXLDLEKCLYVPECARNLVSVGRL-DNVGFSFKICNG-- 369
N + G L L LY PE NL+SV ++ D++ S +
Sbjct: 382 PNGTSIYVHYAGNVHFTPY----LHLTHVLYSPEFKVNLISVSKICDSLSCSVNFVSNKC 437
Query: 370 VFSLYKHKYYYGSGTLIDGLYHFNLHAEFIES---LFNVEHNIGNKRSAHNECS------ 420
V + G G DGLY ++H F+ L N + NK AH+ C+
Sbjct: 438 VIQDVTSQRMIGLGDKSDGLYKLSMH--FVNQQLQLHNSFKPLPNK-VAHSACNISTSSL 494
Query: 421 --------------AFLWHQRLGNISKERILRLVKGEILPQLDFTDWDVCIDCIKGKXIK 466
+ LWH RLG++S +R+ + + + P + + C C + K
Sbjct: 495 SKSSTVFYSSRIPESALWHFRLGHLSNQRLSTMSR--LYPSIIVDNKAACDICHFARHKK 552
Query: 467 HTLKNPATRSSELLELIHTDIYGPFDVPSWGGEKYFITFIDDFSRYGYVYLLHEKSQSVD 526
+ ++ ++ +L+H DI+GP + G KYF+T +DD +R+ ++ LL K++
Sbjct: 553 LPFPHSSSHANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPI 612
Query: 527 ILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGT 586
++ FI +E Q + K++R+D G E+ F S GI + + T
Sbjct: 613 HIKNFIALIENQFHITPKIIRTDNGSEFL------------LHDFYASKGILHQRSCVET 660
Query: 587 PQQNGVAERWNRTLMKMVRSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVP-KTPYELW 645
PQQNG ER ++ ++ + R++L +PLS W A A +L+NRVP+ + ++PY+L
Sbjct: 661 PQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLL 720
Query: 646 TRRKPNLRHLHVWGCPAKVTIYNPHEKKLDTRTVSGFFIGYLKSQKGTDL 695
P++ V+GC + H KL+TR F+GY KG+ L
Sbjct: 721 YDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKSVFLGYKSGFKGSVL 770
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 97/148 (65%), Gaps = 4/148 (2%)
Query: 822 ELSIDKDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKT 881
L +P S+ E + E W AM+ E+ ++ + W +++LP +K +GC+W++K
Sbjct: 905 SLHAHTEPKSY---TEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKV 961
Query: 882 KWDFKGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIILALVAHYDLELHQMDV 941
K G IERYKARLVAKGY Q +G+DY +T+SPV+K ++R++LAL + + LHQ+DV
Sbjct: 962 KHHADGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDV 1021
Query: 942 KTTFLNGDLEKELYMDQPEGFVVTXKEN 969
FL+GDL++++YMD P G V T K N
Sbjct: 1022 NNAFLHGDLQEDVYMDIPPG-VSTNKPN 1048
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 125/461 (27%), Positives = 207/461 (44%), Gaps = 63/461 (13%)
Query: 258 KKGILYVSAC-FESNLIEVPNNNWWLDSGATTHV----SHIIXGFLSIQPINETEKFLFM 312
+ GI +C F N I +W +DSGA HV +H F I+P+ + +
Sbjct: 332 QSGIHSAFSCSFHVNSIP----SWIIDSGANDHVCFSKTHFT-SFYKIKPV-----LVTL 381
Query: 313 GNRMKARIEGIGTYRLILDTGCXLDLEKCLYVPECARNLVSVGRL-DNVGFSFKICNG-- 369
N + G L L LY PE NL+SV ++ D++ S +
Sbjct: 382 PNGTSIYVHYAGNVHFTPY----LHLTHVLYSPEFKVNLISVSKICDSLSCSVNFVSNKC 437
Query: 370 VFSLYKHKYYYGSGTLIDGLYHFNLHAEFIES---LFNVEHNIGNKRSAHNECS------ 420
V + G G DGLY ++H F+ L N + NK AH+ C+
Sbjct: 438 VIQDVTSQRMIGLGDKSDGLYKLSMH--FVNQQLQLHNSFKPLPNK-VAHSACNISTSSL 494
Query: 421 --------------AFLWHQRLGNISKERILRLVKGEILPQLDFTDWDVCIDCIKGKXIK 466
+ LWH RLG++S +R+ + + + P + + C C + K
Sbjct: 495 SKSSTVFYSSRIPESALWHFRLGHLSNQRLSTMSR--LYPSIIVDNKAACDICHFARHKK 552
Query: 467 HTLKNPATRSSELLELIHTDIYGPFDVPSWGGEKYFITFIDDFSRYGYVYLLHEKSQSVD 526
+ ++ ++ +L+H DI+GP + G KYF+T +DD +R+ ++ LL K++
Sbjct: 553 LPFPHSSSHANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPI 612
Query: 527 ILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGT 586
++ FI +E Q + K++R+D G E+ F S GI + + T
Sbjct: 613 HIKNFIALIENQFHITPKIIRTDNGSEFL------------LHDFYASKGILHQRSCVET 660
Query: 587 PQQNGVAERWNRTLMKMVRSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVP-KTPYELW 645
PQQNG ER ++ ++ + R++L +PLS W A A +L+NRVP+ + ++PY+L
Sbjct: 661 PQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLL 720
Query: 646 TRRKPNLRHLHVWGCPAKVTIYNPHEKKLDTRTVSGFFIGY 686
P++ V+GC + H KL+TR F+GY
Sbjct: 721 YDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKSVFLGY 761
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 184/429 (42%), Gaps = 59/429 (13%)
Query: 273 IEVPNNNWWLDSGATTHVS---HIIXGFLSIQPINETEKFLFMGNRMKARIEGIGTYRLI 329
+ VP+++W +DSGA H+ H+ + I+PI + + N ++ GT ++
Sbjct: 382 LHVPSDHWLIDSGANEHICSSLHLFHSYYRIKPI-----CVNLPNGSSVIVQYAGT--VV 434
Query: 330 LDTGCXLDLEKCLYVPECARNLVSVGRLDN---VGFSFKICNGVFSLYKHKYYYGSGTLI 386
+ LY P L+SV ++ F + V K + G G L
Sbjct: 435 FSPH--FHITHVLYSPSFKVYLISVSKICQSLPYHVHFLLNTYVIQDVKTQKMIGLGNLC 492
Query: 387 DGLYHFNL------HAEFIESLFNVEHNIGNKRSAHNECSAF-----LWHQRLGNISKER 435
DGLY + A FI S + + + + N + +WH RLG++S +R
Sbjct: 493 DGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSNAIWHFRLGHLSNQR 552
Query: 436 ILRLVKGEILPQLDFTDWDVCIDCIKGKXIKHTLKNPATRSSELLELIHTDIYGPFDVPS 495
+ + +D + + +S EL+H DI+GP V S
Sbjct: 553 LSMMHSLYSSITIDNKAYSI--------------------ASSKFELLHFDIWGPLSVTS 592
Query: 496 WGGEKYFITFIDDFSRYGYVYLLHEKSQSVDILEIFINEVERQLNRKVKVVRSDRGGEYY 555
G KYF+T +DDFSR+ +V LL KS+ + ++ F+ + K +RSD G E+
Sbjct: 593 VHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTHYQITPKYIRSDNGPEFL 652
Query: 556 GKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAERWNRTLMKMVRSMLNNCTVPL 615
+F S GI + + TPQQNG ER ++ ++ + R++L +P
Sbjct: 653 ------------IPEFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQSKLPN 700
Query: 616 SLWMDALKTAAYLLNRVPSKAVP-KTPYELWTRRKPNLRHLHVWGCPAKVTIYNPHEKKL 674
W A+ A +L+N+VP+ K+PY+L P++ V+GC + KL
Sbjct: 701 FFWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFASTLLAQRSKL 760
Query: 675 DTRTVSGFF 683
+R F
Sbjct: 761 QSRARKSIF 769
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/404 (24%), Positives = 165/404 (40%), Gaps = 116/404 (28%)
Query: 808 ISSDYVVYSLEHECELSIDKDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELP 867
+S Y ++L +S D +P SF++A + +W AM E+ ++ W V+ P
Sbjct: 136 LSPSYCSFTLA----ISSDIEPSSFKQA---QSDPRWQLAMSPELSALEATGTWIFVDPP 188
Query: 868 EGSKQVGCKWVFKTKWDFKGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIILA 927
+G +KW F+ N
Sbjct: 189 PNISPIG------SKWIFRLN--------------------------------------- 203
Query: 928 LVAHYDLELHQMDVKTTFLNGDLEKELYMDQPEGFVVTXKENLVCELKKSIYGLKQASRQ 987
D TFL+GDL++++YM P+G V + VC+L KS+YGLKQASR+
Sbjct: 204 ------------DANNTFLHGDLQEDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQASRR 250
Query: 988 WYLKFNNTITSYGFIENTIDQCICMKVSGSKLIMLALYVDDILLAANDVGLLHDVNGFLS 1047
W+ K + + + GF++ + D ++ S + L +Y + H G
Sbjct: 251 WFEKLISLLLTIGFVQASADHSFLIRASPTSFTALLIY------------VAHSSKG--- 295
Query: 1048 ENFEMKDMGEASFVIGIEIFRDRSQGLLKLSQRAYIDKVLERFRMEKYSTGIVPIXKGDR 1107
+ L QR Y +L + + P+
Sbjct: 296 ---------------------------ISLCQRKYCLDLLSDAGLTTCKSVSTPL----- 323
Query: 1108 FSKMQCCKNDLERNEMDSI-PYASVVGSLMYAQTCTRLDISFAVGMLGRYQSNPGMDHWK 1166
C + + D + Y ++G L+Y T TR DISFA L ++ + P ++H +
Sbjct: 324 --DYACLLHIDDGPPFDDVLAYRCLIGCLLYLTT-TRPDISFATQQLSQFMAKPSVNHHR 380
Query: 1167 AAKKVLRYLQGTKDHILTYRKSSHLEVVGYSDSDYAGCVDSRKS 1210
A VLRYLQ L + ++S ++++G+SD+D+ GCVDSR+S
Sbjct: 381 TALCVLRYLQVCPGRGLFFPRTSEMQLLGFSDADWGGCVDSRRS 424
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 111/217 (51%), Gaps = 13/217 (5%)
Query: 480 LELIHTDIYGPFDVPSWGGEKYFITFIDDFSRYGYVYLLHEKSQSVDILEIFINEVERQL 539
+L+H DI+GP + S G KYF+T +DD +R+ ++ LL K++ ++ FI +E Q
Sbjct: 40 FQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLWIILLKTKAEVPMHIKNFIVMIENQF 99
Query: 540 NRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAERWNRT 599
+ K++R+D G E+ +F S GI + + TPQQNG ER ++
Sbjct: 100 HVTPKIIRTDNGSEFL------------LHEFYASKGILHQSSCVETPQQNGRVERKHQH 147
Query: 600 LMKMVRSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVPK-TPYELWTRRKPNLRHLHVW 658
++ + R++L +PLS W A A +L+NR+ + + +PY L P++ V+
Sbjct: 148 ILNIGRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKVF 207
Query: 659 GCPAKVTIYNPHEKKLDTRTVSGFFIGYLKSQKGTDL 695
GC + H KL+TR F+GY KG L
Sbjct: 208 GCLCYASSLQSHITKLETRARKSVFLGYKLGFKGYVL 244
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 837 ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKWDFKGNIERYKARL 896
E + E W AM+ E+ ++ + W +++ P +K +GC+W++K K G IERYKARL
Sbjct: 390 EANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTIERYKARL 449
Query: 897 VAKGYTQ 903
VAKGY Q
Sbjct: 450 VAKGYNQ 456
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 109 bits (273), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 116/473 (24%), Positives = 203/473 (42%), Gaps = 137/473 (28%)
Query: 771 QNDHINDEPVNNEQFTNDQVVSQEIALWRSQRQRRPAISSDYVVY----SLEHECELSID 826
+N I ++ ++E TN++V+S+E++ RP + + + + E+ D
Sbjct: 127 KNVIIENKKESDELLTNEEVISEEVSYEEPTTIARPQRNKQMLRRLQDCQVTGDDEIGSD 186
Query: 827 KDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKWDFK 886
+ V F AM D + +++S NQ W+L++L +G K + KWVFK K + +
Sbjct: 187 GELVHF--AMLVDTKPLY------KLKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPE 238
Query: 887 GNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIILALVAHYDLELHQMDVKTTFL 946
G I ++KARLVA R+ L
Sbjct: 239 GKIVKHKARLVA------------------------RVFL-------------------- 254
Query: 947 NGDLEKELYMDQPEGFVVTXKENLVCELKKSIYGLKQASRQWYLKFNNTITSYGFIENTI 1006
+ EGF T +V +L K++YGLKQA R W N I + F+E
Sbjct: 255 -----------KKEGFDYT---EVVFKLNKALYGLKQAPRAW----NKRIEKF-FVEQGF 295
Query: 1007 DQCIC---MKVSGSKLIMLALYVDDILLAANDVGLLHDVNGFLSENFEMKDMGEASFVIG 1063
+C+ + V GS+ G + +I
Sbjct: 296 KKCLAEHGVYVKGSE-------------------------------------GTSLLIIC 318
Query: 1064 IEIFRDRSQGLLKLSQRAYIDKVLERFRMEKYSTGIVPIXKGDRFSKMQCCKNDLERNE- 1122
+EI R ++GL+ L+Q Y ++ ++F M +++ I + N E E
Sbjct: 319 LEILRT-TKGLI-LNQTKYDTEIQKKFNMLDFNSSIT----------LAYANNINEVKEE 366
Query: 1123 ---MDSIPYASVVGSLMYAQTC-TRLDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGT 1178
+D ++G L Y C +RLDIS++VG++ ++ SNP H+ AAKK++RY+ GT
Sbjct: 367 DKGVDPTILRRLIGLLRY--LCQSRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGT 424
Query: 1179 KDHILTY---RKSSHLEVVGYSDSDYAGCVDSRKSTFGYLSLLAGGAVSWKTE 1228
+ + + +++ L ++ YSD+D+ R+ T +L +L G +SW ++
Sbjct: 425 LQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSK 477
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 603 MVRSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVP-KTPYELWTRRKPNLRHLHVWGCP 661
MVRSML +P W A+ TA Y+LNR P+K + K P E+W+RRKP++ +L V+G
Sbjct: 1 MVRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSI 60
Query: 662 AKVTIYNPHEKKLDTRTVSGFFIGY 686
+ + KKL+ +T + +GY
Sbjct: 61 FYKHVPDSRRKKLEDKTEAMILVGY 85
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 15/219 (6%)
Query: 1013 KVSGSKLIMLALYVDDILLAANDVGLLHDVNGFLSENFEMKDMGEASFVIGIEIFRDRSQ 1072
K + S +L +YVDDI+LA N + + L +F++KD+G+ +V+G+E+ + Q
Sbjct: 4 KHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHSK-Q 62
Query: 1073 GLLKLSQRAYIDKVLE---RFRMEKYSTGIVPIXKGDRFSKMQCCKNDLERNEMDSIPYA 1129
G+ L QR Y +L + ST D K+ ND D Y
Sbjct: 63 GI-SLCQRKYCLDLLSDSGTINSKPVSTS------SDASLKLH---NDSSPPYEDIPSYR 112
Query: 1130 SVVGSLMYAQTCTRLDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDHILTYRKSS 1189
++G L+Y + TR DI+F L ++ S P H AA +VL+YL+ L + ++S
Sbjct: 113 RLIGRLLYLNS-TRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNS 171
Query: 1190 HLEVVGYSDSDYAGCVDSRKSTFGYLSLLAGGAVSWKTE 1228
L + G+SD D+AGCVDSR+S G + +SW+T+
Sbjct: 172 SLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTK 210
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 127/273 (46%), Gaps = 33/273 (12%)
Query: 427 RLGNISKERI--LRLVKGEILPQLDFTDWDVCIDCIKGKXIKHTLKNPATRSSELLELIH 484
+LG++S +R+ + + I+ + D+C K K + ++ + ++ EL+H
Sbjct: 470 KLGHLSHQRMNMMSSLYSNIVSDNKNSVCDIC-HFAKQKHLPFSIS--TSHATSNFELLH 526
Query: 485 TDIYGPFDVPSWGGEKYFITFIDDFSRYGYVYLLHEKSQSVDILEIFINEVERQLNRKVK 544
DI+GP + S G KYF+T +DD SR+ ++ L KS ++ FI V+ Q + K
Sbjct: 527 LDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQFHVTPK 586
Query: 545 VVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAERWNRTLMKMV 604
+RSD G E+ F ES GI + + TPQQNG ER + ++ +
Sbjct: 587 CIRSDNGPEFL------------ILSFYESLGILHQKSCVETPQQNGRVERKHHHILNVG 634
Query: 605 RSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVP-KTPYELWTRRKPNLRHLHVWGCPAK 663
R++L +P S W AL A +L+NR P+ + ++PY + P++
Sbjct: 635 RALLYQSKLPASYWSYALLHAVFLINRKPTPLLEGQSPYYALHHKFPDIDTF-------- 686
Query: 664 VTIYNPHEKKLDTRTVSGFFIGYLKSQKGTDLL 696
+ + TR F+GY KG LL
Sbjct: 687 -------KNQASTRARKTVFLGYKSGYKGFILL 712
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 28/146 (19%)
Query: 848 MKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKWDFKGNIERYKARLVAKGYTQKDGI 907
M+ E+ ++ + W LV+LP K +GC+W++K K G+I+RYKARLV KGY Q +G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 908 DYKETFSP----------------------------VSKKDSLRIILALVAHYDLELHQM 939
DY +T+SP V+K ++R ++AL + +H++
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 940 DVKTTFLNGDLEKELYMDQPEGFVVT 965
D + FL+GDL++++YM P+G +
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGITTS 146
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 135/327 (41%), Gaps = 61/327 (18%)
Query: 381 GSGTLIDGLYHFNLHAE--FIESLFN------VEHNIGNKRSAHNEC---SAFLWHQRLG 429
G G L DGL + A F N V + N S +N S LWH RLG
Sbjct: 391 GLGDLCDGLCRLRIPASSNFSHCFVNNFQCNKVSYESCNSVSCNNNVHIPSTALWHFRLG 450
Query: 430 NISKERILRLVKGEILPQLDFTDWDVCIDCIKGKXIKHTLKNPATRSSELLELIHTDIYG 489
++S +R+ ++ + P + + +C C K K + + +S EL++ DI+G
Sbjct: 451 HLSNQRLSQM--HHLYPDIHVDNKFICDICHFAKQRKLPYNSSTSIASSNFELLYLDIWG 508
Query: 490 PFDVPSWGGEKYFITFIDDFSRYGYVYLLHEKSQSVDILEIFINEVERQLNRKVKVVRSD 549
P S G++YF+T +DD SR+ + L KS+ ++ FI ++ + K++RSD
Sbjct: 509 PLAKVSIHGQRYFLTIVDDHSRFLWTILFKNKSEVPSHIQHFIYLIQNKHKVTPKIIRSD 568
Query: 550 RGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAERWNRTLMKMVRSMLN 609
G + + F S GI + + TPQ N
Sbjct: 569 NGHVFL------------LSAFYASQGIIHQRSCVETPQHN------------------- 597
Query: 610 NCTVPLSLWMDALKTAAYLLNRVPSKAVP-KTPYELWTRRKPNLRHLHVWGCPAKVTIYN 668
+L+NRVP+ + K+PY++ + P++ V+GC +
Sbjct: 598 ----------------VFLINRVPTLVLENKSPYQVLYKTLPDINSFKVFGCLCYASTLQ 641
Query: 669 PHEKKLDTRTVSGFFIGYLKSQKGTDL 695
H KL +R F+GY KG+ L
Sbjct: 642 SHRTKLQSRARKSVFLGYKSGYKGSFL 668
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 13/167 (7%)
Query: 487 IYGPFDVPSWGGEKYFITFIDDFSRYGYVYLLHEKSQSVDILEIFINEVERQLNRKVKVV 546
I+GP V S G +YF+T +DD +R+ +V LL K++ ++ FI ++ + K +
Sbjct: 521 IWGPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAEVSSHVKNFITMIQNHFHTTPKFI 580
Query: 547 RSDRGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAERWNRTLMKMVRS 606
R+D G E+ F SHGI + + TPQQNG ER ++ ++ + R+
Sbjct: 581 RTDNGPEFM------------LPSFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRA 628
Query: 607 MLNNCTVPLSLWMDALKTAAYLLNRVPSKAVP-KTPYELWTRRKPNL 652
+L +P S W A+ A +L+NRVP+ + ++PY L + P++
Sbjct: 629 LLYQSKLPPSFWSYAIHHAVFLINRVPTPLLHNQSPYFLLHHKLPDI 675
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 27/207 (13%)
Query: 1024 LYVDDILLAANDVGLLHDVNGFLSENFEMKDMGEASFVIGIEIFRDRSQGLLKLSQRAYI 1083
+YVDD+++A ND + + +L + F MKD+G + +G+E+ R + GL + QR Y
Sbjct: 5 IYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARG-ANGLF-MCQRKYT 62
Query: 1084 DKVLERFRMEKYSTGIVPIXKGDRFSKMQCCKNDLERNEMDSIP--YASVVGSLMYAQTC 1141
+L+ +M P+ + + L++ S P Y ++ L+Y T
Sbjct: 63 LDILDECKMLDCKPSTFPMEQNQKLV--------LDKGPTCSDPSRYRRLISRLIYL-TI 113
Query: 1142 TRLDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDHILTYRKSSHLEVVGYSDSDY 1201
+I+++V +L +VLRYL+ + + K + L++V Y DSD+
Sbjct: 114 MHPEITYSVHIL--------------TMRVLRYLKSSPGQGIILPKENDLQLVAYCDSDW 159
Query: 1202 AGCVDSRKSTFGYLSLLAGGAVSWKTE 1228
A C +R+ST GYL L +SWKT+
Sbjct: 160 ASCPLTRRSTSGYLMKLGSAPISWKTK 186
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%)
Query: 970 LVCELKKSIYGLKQASRQWYLKFNNTITSYGFIENTIDQCICMKVSGSKLIMLALYVDDI 1029
+V L+KS+YGLKQASR WY K + + YGF E+ D + S + + +YVDD+
Sbjct: 1 MVYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDL 60
Query: 1030 LLAANDVGLLHDVNGFLSENFEMKDMGEASFVIGIEIFR 1068
++A ND + + +L + F MKD+G + +G+E+ R
Sbjct: 61 VIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELAR 99
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 456 CIDCIKGKXIKHTLKNP-ATRSSELLELIHTDIYGPFDVPSWGGEKYFITFIDDFSRYGY 514
C C+ GK + K+ R+ +L ++H+DIYGP VP++ G +YFITF+D++S+ +
Sbjct: 15 CNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITFVDEYSKMLW 74
Query: 515 VYLLHEKSQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGK 557
+YL+ KS ++++ + F E+Q K+K++ + GGEY K
Sbjct: 75 LYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSK 117
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 73.6 bits (179), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 586 TPQQNGVAERWNRTLMKMVRSMLNNCTVPLSLWMDALKTAAYLLNRVPSKAVP-KTPYEL 644
TPQ NGVAER N+TL++ R ML+N + + W +A+ T YL+NR P ++ KT YEL
Sbjct: 5 TPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYEL 64
Query: 645 WTRRKPNLRHLHVWGCPAKVTIYNPHEKKLDTR 677
W + + +L V+GC Y+ +E KL+ R
Sbjct: 65 WPGKSVDYSNLRVFGC---TVYYHVNEWKLERR 94
>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
EGN_Mt090430 20090702
Length = 532
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/417 (19%), Positives = 155/417 (37%), Gaps = 42/417 (10%)
Query: 4 FNGLNYADWSEQIHYQLGVLDLDLALVSEKPAAITETSTEADKSHYEAWERSNRLSLNLM 63
F G N+ W+E++ L V + L KP ++D E W +N++ + +
Sbjct: 44 FKGQNFRRWNERVFTLLDVHGVASVLTDVKP-----DEAKSDAKQIEKWNNANKVCRHTI 98
Query: 64 RMTMAENVKPSMPRTDNAREYMLKIKEYSQSDIDDKSIVGSLMSELTTKKFDWSQSIHNH 123
T+++ + + + DI D V E T +KF ++
Sbjct: 99 LSTISDAL------------FDVYCSYKVAKDIWDNMNVKYTAEEATKQKFVINE----- 141
Query: 124 VIGMQNLAAKLKSMGMDVSESFLVQFIINSLPLEFGQFQVNYNTLKEKWNIQE-IKAMLI 182
L +LK+ + + + F+ ++ LP + ++ ++ ++ + I+ ++I
Sbjct: 142 ---YHQLIEELKAENIILPDVFVAAALVEKLPSSWDDYKQQLKHKHKQMSLNDLIRHIII 198
Query: 183 QEEGRLKKLKEHSINLTLHXXXXXXXXXXXXXXXXRDSAPMKVNEGQIRKEL-KCYFCRK 241
++ R + + L + +KV + L +CY C K
Sbjct: 199 EDTSRKECGAARAKALESRANLIQNNARKQQRYENKSDHALKVTNPNFKANLGECYVCGK 258
Query: 242 NGHFKKDCPKRKIWFE---------------KKGILYVSACFESNLIEVPNNNWWLDSGA 286
GH C RK+ + ++A + W +DSGA
Sbjct: 259 KGHKAYHCRYRKVNGQPPKPKANLTQGDDKKYDDDDVIAAVISKVHLVNDVQKWVVDSGA 318
Query: 287 TTHVSHIIXGFLSIQPINETEKFLFMGNRMKARIEGIGTYRLILDTGCXLDLEKCLYVPE 346
T H+ F S + + E +++G+ + G G L L +G L L L VP
Sbjct: 319 TRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTSGKTLALSDVLNVPT 378
Query: 347 CARNLVSVGRLDNVGFSFKICNGVFSLYKHKYYYGSGTLIDGLYHFNLHAEFIESLF 403
NL+SV L+ VG + + K+ + G+G GL+ + A + L+
Sbjct: 379 IRTNLISVALLNKVGVKVSFESDKMVMSKNNVFVGNGYCDQGLFVLSSFANEPDELY 435
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 54/93 (58%)
Query: 848 MKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKWDFKGNIERYKARLVAKGYTQKDGI 907
M ++++++ W L L + +GCKW ++ K G IER+K L+ K YT+++G+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 908 DYKETFSPVSKKDSLRIILALVAHYDLELHQMD 940
+ +TFS V+K + ++L++V L Q+D
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H fold
CU571152.5 61656-61988 H EGN_Mt090430 20090702
Length = 110
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 497 GGEKYFITFIDDFSRYGYVYLLHEKSQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYG 556
GG +YF+ FIDD+S + ++Y++ + + I F ++ Q ++ +KV R D EY
Sbjct: 2 GGARYFVLFIDDYSHFTWIYMIKNRHELTQIYINFAKMIQTQFSKVIKVFRRDNAMEYRD 61
Query: 557 KFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAERWNRTLMKMVRSMLNNCTVP 614
FL G + ++ T QQ G AER +R ++ V +ML + + P
Sbjct: 62 ---------SKLLSFLSEQGTFSEFSYPYTSQQKGRAERKHRHILDSVCAMLISASCP 110
>IMGA|Medtr4g104320.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711151-22711574 H
EGN_Mt090430 20090702
Length = 99
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 41/139 (29%)
Query: 848 MKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKWDFKGNIERYKARLVAKGYTQKDGI 907
M EE+ S+ N+ +LV L K +G KWV+K K + +G I +
Sbjct: 1 MLEELSSIKKNKTLELVGLSTDEKAIGVKWVYKLKTNHEGKIVK---------------- 44
Query: 908 DYKETFSPVSKKDSLRIILALVAHYDLELHQMDVKTTFLNGDLEKELYMDQPEGFVVTXK 967
+ L D+K FLNG LE+ +++ QP G + K
Sbjct: 45 -------------------------KVPLFHFDMKLYFLNGSLEETMFVKQPSGLEIKCK 79
Query: 968 ENLVCELKKSIYGLKQASR 986
E V +L K +YGLKQA R
Sbjct: 80 EENVYKLHKDLYGLKQAPR 98
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 870 SKQVGCKWVFKTKWDFKGNIERYKARLVAKGYTQKDGIDY 909
+K VGC+WV+K K+ G IE+YKARLVAKGYTQ +G D+
Sbjct: 11 AKIVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 956 MDQPEGFVVTXKENLVCELKKSIYGLKQASRQWYLKFNNTITSYGFIENTIDQCICMKVS 1015
M QP GFV N VC+L+KS+YGLKQA + W+ + Y F D + + V
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 1016 GSKLIMLALYVDDILL 1031
+ +YVDDI L
Sbjct: 61 ANTFAYFLVYVDDIPL 76
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 423 LWHQRLGNISKERILRLVKGEILPQLDFTDWDVCIDCIKGKXIKHTLKNPATRSSELLEL 482
LWH+RL ++ ++ +++L K +L + C CI K K + + + + +L+L
Sbjct: 10 LWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPTILDL 69
Query: 483 IHTDIYGPFDVPSWGGEKYFITFIDD 508
+H ++GP + GG YF++FIDD
Sbjct: 70 VHCHLFGPMKTGTIGGSTYFLSFIDD 95
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 423 LWHQRLGNISKERILRLVKGEILPQLDFTDWDVCIDCIKGKXIKHTLKNPATRSSELLEL 482
LWH+RL ++ ++ +++L K +L + C CI K K + + + + +L+L
Sbjct: 10 LWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPTILDL 69
Query: 483 IHTDIYGPFDVPSWGGEKYFITFIDD 508
+H ++GP + GG YF++FIDD
Sbjct: 70 VHCHLFGPMKTGTIGGSTYFLSFIDD 95
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 535 VERQLNRKVKVVRSDRGGEYYGKFNENGQCPGPFAKFLESHGICAXYTMLGTPQQNGVAE 594
+E Q +KVK ++ D G E+ C F +F ++ GI + + TPQQN VA+
Sbjct: 18 LENQFGKKVKRLQIDNGLEF---------CWSEFNEFCKTEGISRHHMVRNTPQQNSVAK 68
Query: 595 RWNRTLMKMVRSMLNNCTVPLSLWMDA 621
R N+TL++ R ML+N + + W +
Sbjct: 69 RMNQTLLERARCMLSNAGLTRTFWGET 95
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 939 MDVKTTFLNGDLEKELYMDQPEGFVVTXKENLVCELKKSIYGLKQASRQWYLK 991
MDV FL+GDL++++YM P GF + LVC+L+KS Y LK A + W+ K
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTS-SSRLVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr8g128700.1 Integrase, catalytic region
chr08_pseudomolecule_IMGAG_V3 30179122-30179823 H
EGN_Mt090430 20090702
Length = 193
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 423 LWHQRLGNISKERILRLVKGEILPQLDFTDWDVCIDCIKGKXIKHTLKNPATRSSELLEL 482
LWH RLG++S+ + L K +L D + GK ++ R+ L+
Sbjct: 103 LWHMRLGHMSERGMQILAKDNLLYGHKIKDPGLSEHYAFGKRHRNKFLKVIHRTKGTLDY 162
Query: 483 IHTDIYGPFDVPSWGGEKYFITFIDDFSR 511
IH D + P V S GG KYF++ IDD+SR
Sbjct: 163 IHDDCWEPSRVESLGGHKYFLSLIDDYSR 191
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 1071 SQGLLKLSQRAYIDKVLERFRMEKYSTGIVPIXKGDRFSKMQCCKNDLERNEMDSIPYAS 1130
S+GL+ L Q Y ++L++F M ++ I D + + D +D +
Sbjct: 7 SKGLI-LHQTDYASEILKKFNMLDCNSTIT---HADANIIYEVKEED---EGVDPTMFRR 59
Query: 1131 VVGSLMYAQTC-TRLDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDH---ILTYR 1186
++GSL Y C +R IS+ VG++ R+ SNP ++ +AKK+LRY+ T + L +
Sbjct: 60 LIGSLRYL--CQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQ 117
Query: 1187 KSSHLEVVGYSDSD 1200
+ L++ GYSD+D
Sbjct: 118 ATEQLDMEGYSDAD 131