Jatropha Genome Database

JcCB0033761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033761.10 + phase: 0 
         (225 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g105490.1 VQ chr07_pseudomolecule_IMGAG_V3 24179249-2...   120   4e-28

>IMGA|Medtr7g105490.1 VQ chr07_pseudomolecule_IMGAG_V3
           24179249-24178132 F EGN_Mt090430 20090702
          Length = 235

 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/244 (45%), Positives = 131/244 (53%), Gaps = 33/244 (13%)

Query: 2   ENLA-SLEPFLFR-TFQDSWISEAYARDTETLTKALQKSLFSDN----------NLICSD 49
           ENLA S+E +++R    D+W+S+  +RD ETLTKAL KSL S +          NLI +D
Sbjct: 5   ENLAASIESWMYRPAMTDTWLSDYISRDAETLTKALHKSLSSSSSPEDALSPFLNLIKTD 64

Query: 50  TQHPPTTPTASNVSGSDPETVAPPKRQRNGIPATSGXXXXXXXXXXXXXQTTFITADPAN 109
           +    TT T   VS       + PKRQR      +G             QTTFITADPAN
Sbjct: 65  SATTTTT-TTPTVSSLSASDDSAPKRQR----VAAGKISKRKSRASKRSQTTFITADPAN 119

Query: 110 FRQMVQQVTGVRFGN-AQLPPVPVLKPEPQRP-----GTRLHAAAGCLPTLDTSAFLLDH 163
           FRQMVQQVTGVRFG+ + +   P++KPEP R      G R     GCLPTLDTSAFLL H
Sbjct: 120 FRQMVQQVTGVRFGSGSNVSMAPLVKPEPHRAVGVNGGGRFTTGGGCLPTLDTSAFLLQH 179

Query: 164 HQQPQMXXXXXXXXXXXXXXXXXXXXXXXXFPQPVVADGGPTAGLDYDTFSS-FPTLE-S 221
           HQQ Q                         F QP+  D    AG D++TFSS FPTLE S
Sbjct: 180 HQQQQ-----QTMVGPNSDGPEMTGLGPLSFGQPIGEDA---AGYDFETFSSCFPTLESS 231

Query: 222 WKVM 225
           WKVM
Sbjct: 232 WKVM 235