Jatropha Genome Database

JcCB0033501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033501.20 + phase: 2 /TE
         (256 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g089840.1 copia LTR rider, related chr05_pseudomolecu...   125   2e-29
IMGA|Medtr4g110620.1 polyprotein-like, related chr04_pseudomolec...   109   2e-24
IMGA|Medtr6g036460.1 hypothetical protein chr06_pseudomolecule_I...    95   4e-20
IMGA|Medtr6g036320.1 hypothetical protein chr06_pseudomolecule_I...    95   4e-20
IMGA|Medtr2g100740.1 hypothetical protein chr02_pseudomolecule_I...    77   1e-14
IMGA|Medtr2g100470.1 hypothetical protein chr02_pseudomolecule_I...    77   1e-14

>IMGA|Medtr5g089840.1 copia LTR rider, related
           chr05_pseudomolecule_IMGAG_V3 34952559-34951978 H
           EGN_Mt090430 20090702
          Length = 154

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 83/127 (65%), Gaps = 2/127 (1%)

Query: 106 YQGKNISNRLYLKEQFHTLKMAEGTKLSDHLSVLNGIVSELETLGVQTEDEDKALRLILS 165
           YQ K ISNRL LKEQFH L+M EGTK+SDHLS LN IVSELE++ V+ +DEDK LR+ILS
Sbjct: 29  YQAKGISNRLLLKEQFHNLRMDEGTKISDHLSTLNNIVSELESIEVKIDDEDKTLRIILS 88

Query: 166 LPSTYEHMKPVLKYGSKEVVYADVVSKLLIEERRLNEMKNKSYEDSALFVGTXXXXXXXX 225
           LP +Y H+KPVL YG + + + +V +K++ EE  +    ++S   S L + +        
Sbjct: 89  LPPSYVHLKPVLMYGKESLSFEEVATKIISEEMTMK--SDESTSSSMLLIRSGANGKKIH 146

Query: 226 XXXVVCW 232
                CW
Sbjct: 147 AKDFSCW 153


>IMGA|Medtr4g110620.1 polyprotein-like, related
           chr04_pseudomolecule_IMGAG_V3 25158785-25159321 H
           EGN_Mt090430 20090702
          Length = 178

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 88/159 (55%), Gaps = 7/159 (4%)

Query: 83  KNVLANVLGXXXXXXXXXXXXXXYQGKNISNRLYLKEQFHTLKMAEGTKLSDHLSVLNGI 142
           KN+ ANV                YQ K ISN+L+ KE+FH L M EGTK+ +HL  LN I
Sbjct: 23  KNLPANVQNLRSAKEFCKKLEGLYQAKKISNQLFPKEKFHNLHMDEGTKIFNHLCTLNDI 82

Query: 143 VSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVVYADVVSKLLI--EERRL 200
           + ELE++ V+  DEDKAL LILSLP  Y H+K VL YG + + + +V +K+ I  EERR 
Sbjct: 83  IFELESIKVKIYDEDKALSLILSLPPFYVHLKLVLMYGKESLSFEEVATKIKIISEERR- 141

Query: 201 NEMKNKSYEDSALFVGTXXXX--XXXXXXXVVCWVCGQT 237
             MK+     S+L + T             + CW CG +
Sbjct: 142 --MKSDESTSSSLMLLTKSGANGKRIGAKNMACWKCGMS 178


>IMGA|Medtr6g036460.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 8068482-8067914 H
           EGN_Mt090430 20090702
          Length = 155

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 66/118 (55%), Gaps = 18/118 (15%)

Query: 83  KNVLANVLGXXXXXXXXXXXXXXYQGKNISNRLYLKEQFHTLKMAEGTKLSDHLSVLNGI 142
           KNVL NV                YQ K+ISNRL LKEQFH L+M E              
Sbjct: 23  KNVLVNVQNLSSAKELWEKLKGLYQAKDISNRLLLKEQFHNLRMDE-------------- 68

Query: 143 VSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVVYADVVSKLLIEERRL 200
               E++ V+ +DEDKALR ILSLP +Y H+KPV  YG + + + +V +K++ EERR+
Sbjct: 69  ----ESIEVKIDDEDKALRFILSLPPSYVHLKPVFMYGKESLSFEEVATKIIYEERRM 122


>IMGA|Medtr6g036320.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 7989980-7989412 H
           EGN_Mt090430 20090702
          Length = 155

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 66/118 (55%), Gaps = 18/118 (15%)

Query: 83  KNVLANVLGXXXXXXXXXXXXXXYQGKNISNRLYLKEQFHTLKMAEGTKLSDHLSVLNGI 142
           KNVL NV                YQ K+ISNRL LKEQFH L+M E              
Sbjct: 23  KNVLVNVQNLSSAKELWEKLKGLYQAKDISNRLLLKEQFHNLRMDE-------------- 68

Query: 143 VSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVVYADVVSKLLIEERRL 200
               E++ V+ +DEDKALR ILSLP +Y H+KPV  YG + + + +V +K++ EERR+
Sbjct: 69  ----ESIEVKIDDEDKALRFILSLPPSYVHLKPVFMYGKESLSFEEVATKIIYEERRM 122


>IMGA|Medtr2g100740.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 23540921-23533162 H
           EGN_Mt090430 20090702
          Length = 96

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query: 119 EQFHTLKMAEGTKLSDHLSVLNGIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLK 178
           EQFH L+M EGTK+SD+LS LN IVSELE++ V  +DEDK LR I SLP  Y + K VL 
Sbjct: 29  EQFHNLRMDEGTKISDNLSTLNNIVSELESIEVMIDDEDKVLRRIFSLPPFYVYHKLVLM 88

Query: 179 YGSKEVVY 186
           +  + + +
Sbjct: 89  FEKERLSF 96


>IMGA|Medtr2g100470.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 23413375-23412996 H
           EGN_Mt090430 20090702
          Length = 96

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query: 119 EQFHTLKMAEGTKLSDHLSVLNGIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLK 178
           EQFH L+M EGTK+SD+LS LN IVSELE++ V  +DEDK LR I SLP  Y + K VL 
Sbjct: 29  EQFHNLRMDEGTKISDNLSTLNNIVSELESIEVMIDDEDKVLRRIFSLPPFYVYHKLVLM 88

Query: 179 YGSKEVVY 186
           +  + + +
Sbjct: 89  FEKERLSF 96