Jatropha Genome Database

JcCB0033401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033401.20 + phase: 0 /partial
         (176 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g107870.1 Zinc finger, CCCH-type chr04_pseudomolecule...   140   3e-34

>IMGA|Medtr4g107870.1 Zinc finger, CCCH-type
           chr04_pseudomolecule_IMGAG_V3 23681270-23675049 E
           EGN_Mt090430 20090702
          Length = 393

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 98/188 (52%), Gaps = 21/188 (11%)

Query: 5   KELCRNFQRGSCQYGERCKFLHPIXXXXXXXXXXXXX--------------XXXXXXXXX 50
           +E+C++F RG C++G  C+ +H                                      
Sbjct: 2   REICQHFLRGRCRFGTTCRNIHQQQQRTSNNNGFGGGGGGGQQNTNPFGFGSTSTSASNN 61

Query: 51  XXXXXXXXGFGVQSKAA--NDFGNKQQQQFKPFENKWTRFSPISNGGGGSQSRQPDNQPQ 108
                   GFG Q+  A  +DF   Q Q  +   NKW+R S     G     RQ DN  Q
Sbjct: 62  HQPKTNPFGFGSQNNGAPRSDFKPNQSQPLE--NNKWSRSSSKPQNG---TPRQSDNNSQ 116

Query: 109 AVNHKCTDPESCKREIIEDFEHEKPLWKLTCYGHSKKGPCDIFGDVSYEELRAVAYDDAK 168
            VNHKCTDPE+CKR+I+EDF+ EKPLW LTCYGH K  PCDI GD+SYEELRA AY+D K
Sbjct: 117 TVNHKCTDPEACKRQIVEDFQQEKPLWILTCYGHCKGAPCDIVGDISYEELRAAAYEDNK 176

Query: 169 RGLSLQSI 176
           +G+SL  I
Sbjct: 177 KGMSLPQI 184