Jatropha Genome Database

JcCB0033401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033401.10 - phase: 0 
         (753 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g055570.1 Pyridoxal-dependent decarboxylase; Nucleoti...   261   1e-69

>IMGA|Medtr2g055570.1 Pyridoxal-dependent decarboxylase;
           Nucleotide-binding, alpha-beta plait
           chr02_pseudomolecule_IMGAG_V3 14910289-14915688 E
           EGN_Mt090430 20090702
          Length = 660

 Score =  261 bits (666), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 163/402 (40%), Positives = 238/402 (59%), Gaps = 41/402 (10%)

Query: 9   TTRIYVGGLGESVTSDDLCTIFSKIGGDIKAVDIIRTKGRSFAYIDFSPSSHNSLSKLFS 68
           T RI+VGG+GE+VTSDD+  +F  +G  +++++ IRTKGRS AY+DF   S  SLSKLFS
Sbjct: 10  TVRIFVGGIGEAVTSDDIRRLFESLGS-VQSLETIRTKGRSLAYLDFLADS-KSLSKLFS 67

Query: 69  TYNGCVWKGKRLRLEKAKEHYLDRLKQEWAEDAQLXXXXXXXXXXXXXXKNMESFKKPMK 128
            YNGCVWKG +L+LEKAKEHYLDRLK+EW EDA L                ++      +
Sbjct: 68  KYNGCVWKGGKLKLEKAKEHYLDRLKKEWEEDAILSIEPPASDVSTHKEDLVKEKPNARR 127

Query: 129 ELSSEKKQLRIFFPRLQKLKSLPFSGTGKHRYSFRRVEVPPLPTHFCDCEEHSGSVYTTE 188
            +  + K L I+FPRL+ +KS+PFSGTGKH+YSF+ ++V PLP HFCDCEEH  S + T+
Sbjct: 128 IVDPDAKPLNIYFPRLRTVKSIPFSGTGKHKYSFQNIKVGPLPVHFCDCEEHC-SPFITK 186

Query: 189 KKAIPVLEE------QGGGMSKEELDMMNSVMNKLFEIENVSATAHSDIVLTKEQES--- 239
           K+ + +  E      + GG++ EE+++MN+VMNKL E E VS T H    L K+ +S   
Sbjct: 187 KEKLSMNGETEREKSEIGGINDEEINIMNAVMNKLLEKEKVSNTKH----LGKKHDSFES 242

Query: 240 -SIKVSDDFQSEENEGYSTEDDDNLIINVVQRRKETAFTDQESKLNKGQASKDGPT---- 294
            S+  S++ + +       +DDD+LI N+  ++ + A T  E +L +   S++       
Sbjct: 243 LSVIHSNECEVDSATDDGDDDDDDLITNIATKKNKAALTGTE-ELERIMESQEWSNKTNI 301

Query: 295 --QDVLKSQTRRHDDGNR--------------KGSVSAVSEGNGSFQSNLNEPGNILEAK 338
             ++ +++Q R   + N+               G  S+   G    Q+ L+E G+   AK
Sbjct: 302 AEEEPVEAQKRSKSNSNKVKKRKSLSKSESESNGVASSTPVGKSKMQTLLDEVGS--GAK 359

Query: 339 LIEPESIAKQSDPKLSWSQKSSWRELIGNKSSSAMNISDILP 380
             EPE    +S  K+SWSQKSSWREL+G   +++ + S I P
Sbjct: 360 PTEPEYDFGES-AKVSWSQKSSWRELVGKGGNASFSASLISP 400



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 96/202 (47%), Gaps = 41/202 (20%)

Query: 563 LEGPAETQPT-----------KQDSASNETGRGSAWLNKASWTQLVAXXXXXXXXIAQIL 611
           +E PAE QPT           + + A   TG G +W  K SWTQL A        ++Q+L
Sbjct: 485 IEEPAEAQPTNKQVITEPAETQHNIAPKITGTGVSWWQKKSWTQL-ANENNSPFSLSQLL 543

Query: 612 PGLNFEKQEPVKPDGVIIADSTSCKHSDITEKRKSHTAVDGEMALGFERDRDVKSTPELS 671
           P ++F +Q   +P  +  A S+ CKH+   +       VDG +  GF     V   P  S
Sbjct: 544 PDISFPEQTAKEPI-LYPAGSSECKHNGADK-----NTVDGTVTDGFNLGEIV---PGNS 594

Query: 672 QHMVVGNNDVPAPTDGKYGSATKQAAPPTENIYRSAKKQFDLRTNVGGVLIGESCSFMRT 731
           +H   G +D+              +AP  E I  ++      R     V IGE+CSFMR+
Sbjct: 595 EH--AGTDDI-------------VSAPVVEKIVETSP-----RERSANVEIGETCSFMRS 634

Query: 732 DASLKEWENIKAALSGSRKRKR 753
             SLKEW+  KAA+SGS KRKR
Sbjct: 635 ADSLKEWKKAKAAVSGSLKRKR 656