Jatropha Genome Database
- JcCB0032671.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0032671.10 + phase: 0
(349 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr7g093350.1 Nucleotide-binding, alpha-beta plait chr07_... 364 e-101
IMGA|Medtr8g093540.1 RNA-binding region RNP-1 (RNA recognition m... 98 7e-21
IMGA|Medtr6g028110.1 RNA-binding region RNP-1 (RNA recognition m... 56 3e-08
IMGA|Medtr4g095700.1 RNA-binding region RNP-1 (RNA recognition m... 55 4e-08
IMGA|Medtr4g095740.1 RNA-binding region RNP-1 (RNA recognition m... 55 7e-08
IMGA|Medtr1g117240.1 RNA-binding region RNP-1 (RNA recognition m... 54 8e-08
IMGA|Medtr3g036670.1 Carbohydrate kinase, PfkB; Nucleotide-bindi... 54 1e-07
IMGA|Medtr4g095640.1 RNA-binding region RNP-1 (RNA recognition m... 54 2e-07
IMGA|Medtr1g065570.1 RNA-binding region RNP-1 (RNA recognition m... 53 2e-07
IMGA|Medtr7g118370.1 Nucleotide-binding, alpha-beta plait chr07_... 52 4e-07
IMGA|Medtr8g093540.3 Nucleotide-binding, alpha-beta plait chr08_... 51 8e-07
IMGA|Medtr7g145980.1 Calcium-binding EF-hand; Nucleotide-binding... 50 1e-06
IMGA|Medtr5g078580.1 RNA-binding region RNP-1 (RNA recognition m... 49 4e-06
>IMGA|Medtr7g093350.1 Nucleotide-binding, alpha-beta plait
chr07_pseudomolecule_IMGAG_V3 20909795-20905967 E
EGN_Mt090430 20090702
Length = 566
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 165/224 (73%), Positives = 190/224 (84%)
Query: 5 NVNSVFYADTYHPIQAGSIDGTDIVPHDNAVYRALLCSSAGLYDPFGDPKVIGDPYCTVF 64
N+NSVFY++ YHPIQAGSIDGTDIVPHDNA++RA LCSS GLYDPFGDPK GDPYCT+F
Sbjct: 7 NLNSVFYSNAYHPIQAGSIDGTDIVPHDNAIFRAQLCSSIGLYDPFGDPKATGDPYCTLF 66
Query: 65 VGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAHH 124
VGRLS TTEE+LRK MS++G+VKNLRLVRDIVTGASRGYAFVE+ETEREMRR+Y DAHH
Sbjct: 67 VGRLSRLTTEETLRKVMSEFGQVKNLRLVRDIVTGASRGYAFVEFETEREMRRAYMDAHH 126
Query: 125 SYIDDSEIMVDYNRQQLMPGWIPXXXXXXXXXXKESGQLRFGGRERPFRAPLQSIPLDDL 184
+DD EI+VDYNRQQLMPGWIP KESGQLRFGGRE+PFRAPL+ IP ++L
Sbjct: 127 LIVDDCEIIVDYNRQQLMPGWIPRRLGGGLSGNKESGQLRFGGREKPFRAPLKPIPYEEL 186
Query: 185 KRLGIPPPPEGRYMSCFQVPSPPRRNRSSIDREESSRMRSSIDK 228
K+LGIPPPPEG YMS FQVPSPPRR+ + D++E S R S ++
Sbjct: 187 KKLGIPPPPEGSYMSRFQVPSPPRRDTNLSDKDEDSDRRGSSER 230
>IMGA|Medtr8g093540.1 RNA-binding region RNP-1 (RNA recognition
motif) chr08_pseudomolecule_IMGAG_V3 20579265-20573723 E
EGN_Mt090430 20090702
Length = 502
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%)
Query: 47 YDPFGDPKVIGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAF 106
YDP DP + GDPY T+FV RLS+ TTE +++ YG +K +RLV D + RGYAF
Sbjct: 121 YDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAF 180
Query: 107 VEYETEREMRRSYKDAHHSYIDDSEIMVDYNRQQLMPGWIP 147
+EY R+M+ +YK A I+ ++VD R + +P W P
Sbjct: 181 IEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRP 221
>IMGA|Medtr6g028110.1 RNA-binding region RNP-1 (RNA recognition
motif); Zinc finger, CCHC-type; Peptidyl-prolyl
cis-trans isomerase, cyclophilin type
chr06_pseudomolecule_IMGAG_V3 6287888-6293224 E
EGN_Mt090430 20090702
Length = 580
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 59 PYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRS 118
P +FV +L+ T +E L S++G V + ++RD TG S YAF+E+E + ++
Sbjct: 217 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQA 276
Query: 119 YKDAHHSYIDDSEIMVDYNRQQLMPGW 145
Y ++ IDD I VD++ Q + W
Sbjct: 277 YFKMDNALIDDRRIHVDFS-QSVAKLW 302
>IMGA|Medtr4g095700.1 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V3 19963139-19964257 E
EGN_Mt090430 20090702
Length = 190
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 64 FVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAH 123
FVG L+ T ++L +A SK+G + + +++ D TG SRG+ FV + E+ MR + ++ +
Sbjct: 11 FVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMN 70
Query: 124 HSYIDDSEIMVD 135
ID I V+
Sbjct: 71 GQDIDGRNITVN 82
>IMGA|Medtr4g095740.1 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V3 19980347-19981422 E
EGN_Mt090430 20090702
Length = 164
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 64 FVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAH 123
FVG L+ T E+L KA S+YG + + +++ D TG SRG+ FV + E+ MR + + +
Sbjct: 11 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 70
Query: 124 HSYIDDSEIMVD 135
+D I V+
Sbjct: 71 GQDMDGRNITVN 82
>IMGA|Medtr1g117240.1 RNA-binding region RNP-1 (RNA recognition
motif) chr01_pseudomolecule_IMGAG_V3 25070611-25067460 F
EGN_Mt090430 20090702
Length = 284
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+FV LS T+E++LR A +G + ++++ D ++ S+GYAF+EY TE + K+
Sbjct: 194 LFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEM 253
Query: 123 HHSYIDDSEIMVD 135
+ I+ I+VD
Sbjct: 254 NGKIINGWMIVVD 266
>IMGA|Medtr3g036670.1 Carbohydrate kinase, PfkB; Nucleotide-binding,
alpha-beta plait chr03_pseudomolecule_IMGAG_V3
9736282-9740531 E EGN_Mt090430 20090702
Length = 453
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 59 PYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREM 115
P +FVG +S+ T E+SL A SKYG+V + R++ D +G S+G+ FV Y T E
Sbjct: 48 PNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEA 104
>IMGA|Medtr4g095640.1 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V3 19936051-19937060 E
EGN_Mt090430 20090702
Length = 161
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 64 FVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAH 123
FVG L+ T E+L KA S+YG + + +++ D TG SRG+ FV + E+ M + + +
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 124 HSYIDDSEIMVD 135
+D I V+
Sbjct: 69 GQDLDGRNITVN 80
>IMGA|Medtr1g065570.1 RNA-binding region RNP-1 (RNA recognition
motif) chr01_pseudomolecule_IMGAG_V3 13058238-13061069 F
EGN_Mt090430 20090702
Length = 285
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+FVG L+ T ESL +A ++G V R++ D TG SRGY FV Y T+ EM D
Sbjct: 206 LFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEM-----DT 260
Query: 123 HHSYIDDSEI 132
+ +D+ E+
Sbjct: 261 ALAIMDNVEL 270
>IMGA|Medtr7g118370.1 Nucleotide-binding, alpha-beta plait
chr07_pseudomolecule_IMGAG_V3 27924352-27927181 E
EGN_Mt090430 20090702
Length = 141
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+F+ LS TT+E L +A S +G++ +++ D +G S+G+AFV Y T E ++ +
Sbjct: 37 LFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGM 96
Query: 123 HHSYIDDSEIMVD 135
+ ++D I VD
Sbjct: 97 NAKFLDGWVIFVD 109
>IMGA|Medtr8g093540.3 Nucleotide-binding, alpha-beta plait
chr08_pseudomolecule_IMGAG_V3 20579265-20577461 E
EGN_Mt090430 20090702
Length = 174
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 47 YDPFGDPKVIGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLV 93
YDP DP + GDPY T+FV RLS+ TTE +++ YG +K + ++
Sbjct: 121 YDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVGIL 167
>IMGA|Medtr7g145980.1 Calcium-binding EF-hand; Nucleotide-binding,
alpha-beta plait chr07_pseudomolecule_IMGAG_V3
34831409-34837550 E EGN_Mt090430 20090702
Length = 479
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
VF+G L T+++ +R+ G + ++L++D TG S+GYAFV Y+T+ +++ D
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 123 HHSYIDDSEI--MVDYNRQQLMPGWIP 147
H+ + ++ + +L G IP
Sbjct: 166 HNKEFKGKTLRCLLSETKHRLFIGNIP 192
>IMGA|Medtr5g078580.1 RNA-binding region RNP-1 (RNA recognition
motif) chr05_pseudomolecule_IMGAG_V3 29128664-29124287 E
EGN_Mt090430 20090702
Length = 393
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
VFVG + TE + ++YG V ++ LVRD TG S+G+AF+ YE +R + +
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 123 HHSYIDDSEIMVDY 136
+ + + I VD+
Sbjct: 98 NGAQVSGRIIRVDH 111