Jatropha Genome Database

JcCB0031871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031871.20 + phase: 0 /pseudo
         (206 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235756_18.1 hypothetical protein AC235756.1 127598-132422...    62   1e-10
IMGA|Medtr7g005890.1 phosphatidylinositolglycan-related chr07_ps...    62   2e-10

>IMGA|AC235756_18.1 hypothetical protein AC235756.1 127598-132422 E
           EGN_Mt090430 20090702
          Length = 302

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 7/78 (8%)

Query: 1   MADLSITDRRYTYIHDCKWPSEAIDVHHIVVRKSKTKSFFVYLSAFVLLPNALCL-FLVK 59
           M + S+++ RYTY+HD + PS+  D+HHIV+R+S +K FFVY SA ++L  A+ L FL +
Sbjct: 40  MVEFSVSNARYTYVHDQENPSQNADMHHIVLRRSGSKYFFVYASALLVLACAIYLCFLEE 99

Query: 60  SFVTLT------DIMMIK 71
             ++L       DI ++K
Sbjct: 100 KSISLVYYSLFFDIFLVK 117


>IMGA|Medtr7g005890.1 phosphatidylinositolglycan-related
          chr07_pseudomolecule_IMGAG_V3 702522-705716 E
          EGN_Mt090430 20090702
          Length = 178

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 7/73 (9%)

Query: 6  ITDRRYTYIHDCKWPSEAIDVHHIVVRKSKTKSFFVYLSAFVLLPNALCLFLVKS----- 60
          + D RY Y+HD K+PSE +D+HHIV+R +  K FFVY SA ++L   + L+L++      
Sbjct: 1  MVDTRYNYVHDQKYPSEDVDIHHIVLRSNGGKYFFVYASALIVLACGIYLYLLEEKSISL 60

Query: 61 --FVTLTDIMMIK 71
            +  L DI ++K
Sbjct: 61 VYYSLLFDIFLVK 73