Jatropha Genome Database

JcCB0031871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031871.10 - phase: 0 /partial
         (80 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g013870.1 hypothetical protein chr01_pseudomolecule_I...    93   3e-20
IMGA|Medtr1g014080.2 Protein of unknown function DUF250 chr01_ps...    93   4e-20
IMGA|Medtr1g014080.1 Protein of unknown function DUF250 chr01_ps...    93   4e-20

>IMGA|Medtr1g013870.1 hypothetical protein
          chr01_pseudomolecule_IMGAG_V3 2721559-2722414 E
          EGN_Mt090430 20090702
          Length = 105

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 56/78 (71%), Gaps = 10/78 (12%)

Query: 2  ASNSSNNPILPVXXXXXXXXXXXXRLIKGGDEKLFRGSAMTKRGAYAAISYMSCAVLLVM 61
           SNSS  P+LP+                  D+KLF+GSAMTKRGAYAAISYMSCAVLLVM
Sbjct: 5  TSNSSEKPMLPLSDPPKNQI----------DDKLFKGSAMTKRGAYAAISYMSCAVLLVM 54

Query: 62 FNKAALSSYKFPSANVMS 79
          FNKAALSSY FPSANV++
Sbjct: 55 FNKAALSSYNFPSANVIT 72


>IMGA|Medtr1g014080.2 Protein of unknown function DUF250
          chr01_pseudomolecule_IMGAG_V3 2827561-2832580 E
          EGN_Mt090430 20090702
          Length = 269

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 56/78 (71%), Gaps = 10/78 (12%)

Query: 2  ASNSSNNPILPVXXXXXXXXXXXXRLIKGGDEKLFRGSAMTKRGAYAAISYMSCAVLLVM 61
           SNSS  P+LP+                  D+KLF+GSAMTKRGAYAAISYMSCAVLLVM
Sbjct: 5  TSNSSEKPMLPLSDPPKNQI----------DDKLFKGSAMTKRGAYAAISYMSCAVLLVM 54

Query: 62 FNKAALSSYKFPSANVMS 79
          FNKAALSSY FPSANV++
Sbjct: 55 FNKAALSSYNFPSANVIT 72


>IMGA|Medtr1g014080.1 Protein of unknown function DUF250
          chr01_pseudomolecule_IMGAG_V3 2827561-2832580 E
          EGN_Mt090430 20090702
          Length = 344

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 56/78 (71%), Gaps = 10/78 (12%)

Query: 2  ASNSSNNPILPVXXXXXXXXXXXXRLIKGGDEKLFRGSAMTKRGAYAAISYMSCAVLLVM 61
           SNSS  P+LP+                  D+KLF+GSAMTKRGAYAAISYMSCAVLLVM
Sbjct: 5  TSNSSEKPMLPLSDPPKNQI----------DDKLFKGSAMTKRGAYAAISYMSCAVLLVM 54

Query: 62 FNKAALSSYKFPSANVMS 79
          FNKAALSSY FPSANV++
Sbjct: 55 FNKAALSSYNFPSANVIT 72