Jatropha Genome Database

JcCB0031431.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031431.20 - phase: 0 
         (110 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g104800.1 Rapid ALkalinization Factor chr03_pseudomol...   104   8e-24
IMGA|Medtr7g138890.1 Rapid ALkalinization Factor chr07_pseudomol...    86   4e-18
IMGA|Medtr7g130370.1 Rapid ALkalinization Factor chr07_pseudomol...    80   3e-16
IMGA|Medtr8g138780.1 Rapid ALkalinization Factor chr08_pseudomol...    79   5e-16
IMGA|AC233557_2.1 Rapid ALkalinization Factor AC233557.2 16279-1...    69   4e-13
IMGA|Medtr6g070070.1 Rapid ALkalinization Factor chr06_pseudomol...    60   2e-10
IMGA|Medtr4g132720.1 Rapid ALkalinization Factor chr04_pseudomol...    55   8e-09
IMGA|Medtr5g017130.1 Rapid ALkalinization Factor chr05_pseudomol...    49   5e-07

>IMGA|Medtr3g104800.1 Rapid ALkalinization Factor
           chr03_pseudomolecule_IMGAG_V3 26124645-26125322 F
           EGN_Mt090430 20090702
          Length = 135

 Score =  104 bits (260), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 82/122 (67%), Gaps = 16/122 (13%)

Query: 4   TELYILALIFLHTHFAICNGV--SVSGLNSLENTEI-DAVM--RRV------DWLEEAEM 52
           + +++   +  H +  IC  +  +   LN L+++EI DAV+  +RV      + L + EM
Sbjct: 8   STIFLFLTLLFHAYLPICTSLLPTTVDLNLLKHSEINDAVVITKRVCTKTIGECLTDPEM 67

Query: 53  ---ESEISRRVLLMQK-YISYETLKRDMVPCAKPGASYYDCHAGEANPYSRGCEVITRC- 107
              +SE +RRVL MQK YISY+TLKRDMVPC +PGASYY+CH  +ANPYSRGCEVIT C 
Sbjct: 68  MMMDSESNRRVLAMQKKYISYDTLKRDMVPCDRPGASYYNCHRRQANPYSRGCEVITACV 127

Query: 108 RG 109
           RG
Sbjct: 128 RG 129


>IMGA|Medtr7g138890.1 Rapid ALkalinization Factor
           chr07_pseudomolecule_IMGAG_V3 33060742-33059865 E
           EGN_Mt090430 20090702
          Length = 127

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 49/63 (77%), Gaps = 1/63 (1%)

Query: 48  EEAEMESEISRRVLLMQKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITR 106
           EE + ++EI+RR+L   KYISY  L+R+ VPC++ GASYY+C  G +ANPYSRGC  ITR
Sbjct: 65  EEFQFDNEINRRILATTKYISYGALQRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITR 124

Query: 107 CRG 109
           CRG
Sbjct: 125 CRG 127


>IMGA|Medtr7g130370.1 Rapid ALkalinization Factor
           chr07_pseudomolecule_IMGAG_V3 30457953-30458547 E
           EGN_Mt090430 20090702
          Length = 118

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 47  LEEAE--MESEISRRVLLMQKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEV 103
           +EE E  M SE  RR+L    YISY  L+R+ VPC+  GASYY+C  G EANPYSRGC  
Sbjct: 52  IEEGEFGMNSESHRRILATTHYISYRALQRNTVPCSHKGASYYNCQTGAEANPYSRGCAT 111

Query: 104 ITRCR 108
           ITRCR
Sbjct: 112 ITRCR 116


>IMGA|Medtr8g138780.1 Rapid ALkalinization Factor
           chr08_pseudomolecule_IMGAG_V3 33646686-33645960 E
           EGN_Mt090430 20090702
          Length = 126

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 48  EEAEMESEISRRVLLMQKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITR 106
            E  M+SE +RR+L  ++YISY  L+R+ VPC++ GASYY+C  G +ANPY RGC  ITR
Sbjct: 64  SEFMMDSESNRRILAARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITR 123

Query: 107 CR 108
           CR
Sbjct: 124 CR 125


>IMGA|AC233557_2.1 Rapid ALkalinization Factor AC233557.2
           16279-15696 E EGN_Mt090430 20090702
          Length = 111

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 48  EEAEMESEISRRVLLMQK--YISYETLKRDMVPCAKPGASYYDCHA-GEANPYSRGCEVI 104
            E  M+SE +RR L  +K  YISY  LK + +PC + G SYYDC+A G+ANPY RGC  I
Sbjct: 45  NEMLMDSESNRRTLAGRKRRYISYGALKANNIPCGQKGQSYYDCNARGQANPYRRGCTAI 104

Query: 105 TRC 107
           T C
Sbjct: 105 THC 107


>IMGA|Medtr6g070070.1 Rapid ALkalinization Factor
           chr06_pseudomolecule_IMGAG_V3 13110715-13111124 E
           EGN_Mt090430 20090702
          Length = 105

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 48  EEAEMESEISRRVLLMQKYISYETLKRDMVPCAKPGASYYDC-HAGEANPYSRGCEVITR 106
            E  M+SE +RR     +YISY+ L  D +PC   G SYYDC H  + NPY RGC  IT 
Sbjct: 46  NEMLMDSESNRR-----RYISYDALLADSIPCGLKGQSYYDCNHRDQVNPYRRGCTAITH 100

Query: 107 C 107
           C
Sbjct: 101 C 101


>IMGA|Medtr4g132720.1 Rapid ALkalinization Factor
           chr04_pseudomolecule_IMGAG_V3 31614676-31614030 F
           EGN_Mt090430 20090702
          Length = 119

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 21/106 (19%)

Query: 8   ILALIFLHTHFAICNGVSVSGLNSLENTEIDAVMRRVDWLEEAEMESEISRRVLLMQKYI 67
           +++L   H H +ICNG                 +   +  +E  MESEISRR L  ++YI
Sbjct: 27  VISLSSNHHHASICNGS----------------IAECNQEDEQLMESEISRRFLEQRRYI 70

Query: 68  SYETLKRDMVPC-AKPGASYYDCHAG----EANPYSRGCEVITRCR 108
           S   LKRD   C    G   Y   AG     +NPY+RGC    RCR
Sbjct: 71  SEGALKRDKPVCNGGAGGEAYSKSAGCIPPPSNPYNRGCSKYYRCR 116


>IMGA|Medtr5g017130.1 Rapid ALkalinization Factor
           chr05_pseudomolecule_IMGAG_V3 6103036-6102386 E
           EGN_Mt090430 20090702
          Length = 128

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%)

Query: 49  EAEMESEISRRVLLMQK---YISYETLKRDMVPCA-KPGASYY--DCHA--GEANPYSRG 100
           E + +S+ SRR L   +   YISY  L  + +PC  + G SYY   C+   G  +PY RG
Sbjct: 60  EEDTDSDFSRRSLFWSRVKYYISYGALSANRIPCPPRSGRSYYTHKCYEARGPVHPYYRG 119

Query: 101 CEVITRCR 108
           C  ITRCR
Sbjct: 120 CSAITRCR 127