Jatropha Genome Database

JcCB0031431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031431.10 - phase: 0 
         (117 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g104800.1 Rapid ALkalinization Factor chr03_pseudomol...   123   3e-29
IMGA|Medtr7g138890.1 Rapid ALkalinization Factor chr07_pseudomol...    87   2e-18
IMGA|Medtr7g130370.1 Rapid ALkalinization Factor chr07_pseudomol...    84   2e-17
IMGA|Medtr8g138780.1 Rapid ALkalinization Factor chr08_pseudomol...    74   1e-14
IMGA|AC233557_2.1 Rapid ALkalinization Factor AC233557.2 16279-1...    72   9e-14
IMGA|Medtr6g070070.1 Rapid ALkalinization Factor chr06_pseudomol...    62   6e-11
IMGA|Medtr5g017130.1 Rapid ALkalinization Factor chr05_pseudomol...    54   2e-08
IMGA|Medtr4g132720.1 Rapid ALkalinization Factor chr04_pseudomol...    54   2e-08

>IMGA|Medtr3g104800.1 Rapid ALkalinization Factor
           chr03_pseudomolecule_IMGAG_V3 26124645-26125322 F
           EGN_Mt090430 20090702
          Length = 135

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 85/120 (70%), Gaps = 9/120 (7%)

Query: 6   LYILALIFLYTHFSICNGV--SVSGLNSLEITEI-DAIV--SRPCTRKIGDCLEEAEM-- 58
           +++   +  + +  IC  +  +   LN L+ +EI DA+V   R CT+ IG+CL + EM  
Sbjct: 10  IFLFLTLLFHAYLPICTSLLPTTVDLNLLKHSEINDAVVITKRVCTKTIGECLTDPEMMM 69

Query: 59  -ESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHAGEANPYSRGCEVITRC-RG 116
            +SE +RRVL MQKKYISY+TLKRDMVPC +PGASYY+CH  +ANPYSRGCEVIT C RG
Sbjct: 70  MDSESNRRVLAMQKKYISYDTLKRDMVPCDRPGASYYNCHRRQANPYSRGCEVITACVRG 129


>IMGA|Medtr7g138890.1 Rapid ALkalinization Factor
           chr07_pseudomolecule_IMGAG_V3 33060742-33059865 E
           EGN_Mt090430 20090702
          Length = 127

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 8/118 (6%)

Query: 6   LYILALIFLYTHFSICNGVSVSGLNSLEITE-IDAIVSRPCTRKIGDCL-----EEAEME 59
           L I A + + T  S    V  +G   L   E I    +  C   I DC+     EE + +
Sbjct: 11  LVICATLLMTTMMSSSPTVDAAGGFELGGMEWIHQTKTATCEGSIADCMLQQGEEEFQFD 70

Query: 60  SEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITRCRG 116
           +EI+RR+L    KYISY  L+R+ VPC++ GASYY+C  G +ANPYSRGC  ITRCRG
Sbjct: 71  NEINRRILAT-TKYISYGALQRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRG 127


>IMGA|Medtr7g130370.1 Rapid ALkalinization Factor
           chr07_pseudomolecule_IMGAG_V3 30457953-30458547 E
           EGN_Mt090430 20090702
          Length = 118

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 1   MSRPKLYILALIFLYTHFSICNGVSVSGLNSLEITEIDAIVSRPCTRKIGDCLEEAE--M 58
           MS     +L L       SI    S S      +  +  + +  C   I +C+EE E  M
Sbjct: 1   MSNVSFLLLPLYLFMVSTSIFPATS-SATGEHHLRWVAPMTTPTCQGSIEECIEEGEFGM 59

Query: 59  ESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITRCRG 116
            SE  RR+L     YISY  L+R+ VPC+  GASYY+C  G EANPYSRGC  ITRCR 
Sbjct: 60  NSESHRRIL-ATTHYISYRALQRNTVPCSHKGASYYNCQTGAEANPYSRGCATITRCRN 117


>IMGA|Medtr8g138780.1 Rapid ALkalinization Factor
           chr08_pseudomolecule_IMGAG_V3 33646686-33645960 E
           EGN_Mt090430 20090702
          Length = 126

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 54  EEAEMESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVIT 112
            E  M+SE +RR+L   ++YISY  L+R+ VPC++ GASYY+C  G +ANPY RGC  IT
Sbjct: 64  SEFMMDSESNRRIL-AARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAIT 122

Query: 113 RCR 115
           RCR
Sbjct: 123 RCR 125


>IMGA|AC233557_2.1 Rapid ALkalinization Factor AC233557.2
           16279-15696 E EGN_Mt090430 20090702
          Length = 111

 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 5/72 (6%)

Query: 48  KIGDCL---EEAEMESEISRRVLLMQKK-YISYETLKRDMVPCAKPGASYYDCHA-GEAN 102
           ++GD +    E  M+SE +RR L  +K+ YISY  LK + +PC + G SYYDC+A G+AN
Sbjct: 36  RVGDLIGDDNEMLMDSESNRRTLAGRKRRYISYGALKANNIPCGQKGQSYYDCNARGQAN 95

Query: 103 PYSRGCEVITRC 114
           PY RGC  IT C
Sbjct: 96  PYRRGCTAITHC 107


>IMGA|Medtr6g070070.1 Rapid ALkalinization Factor
           chr06_pseudomolecule_IMGAG_V3 13110715-13111124 E
           EGN_Mt090430 20090702
          Length = 105

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 10/77 (12%)

Query: 42  SRPCTRKIGDCLEEAE---MESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDC-H 97
           S P    +GD + E     M+SE +RR      +YISY+ L  D +PC   G SYYDC H
Sbjct: 31  SFPSPVLVGDLIREENEMLMDSESNRR------RYISYDALLADSIPCGLKGQSYYDCNH 84

Query: 98  AGEANPYSRGCEVITRC 114
             + NPY RGC  IT C
Sbjct: 85  RDQVNPYRRGCTAITHC 101


>IMGA|Medtr5g017130.1 Rapid ALkalinization Factor
           chr05_pseudomolecule_IMGAG_V3 6103036-6102386 E
           EGN_Mt090430 20090702
          Length = 128

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 48/104 (46%), Gaps = 23/104 (22%)

Query: 35  TEIDAIVSRPCTRKIGDCLE----------------EAEMESEISRRVLLMQ--KKYISY 76
           T +DA +  P    I D LE                E + +S+ SRR L     K YISY
Sbjct: 24  THVDAQIEEPTLNLISDTLEWPTTMSSLYNDLEEDNEEDTDSDFSRRSLFWSRVKYYISY 83

Query: 77  ETLKRDMVPCA-KPGASYY--DCHA--GEANPYSRGCEVITRCR 115
             L  + +PC  + G SYY   C+   G  +PY RGC  ITRCR
Sbjct: 84  GALSANRIPCPPRSGRSYYTHKCYEARGPVHPYYRGCSAITRCR 127


>IMGA|Medtr4g132720.1 Rapid ALkalinization Factor
           chr04_pseudomolecule_IMGAG_V3 31614676-31614030 F
           EGN_Mt090430 20090702
          Length = 119

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 45  CTRKIGDCLEEAE--MESEISRRVLLMQKKYISYETLKRDMVPC-AKPGASYYDCHAG-- 99
           C   I +C +E E  MESEISRR  L Q++YIS   LKRD   C    G   Y   AG  
Sbjct: 40  CNGSIAECNQEDEQLMESEISRR-FLEQRRYISEGALKRDKPVCNGGAGGEAYSKSAGCI 98

Query: 100 --EANPYSRGCEVITRCR 115
              +NPY+RGC    RCR
Sbjct: 99  PPPSNPYNRGCSKYYRCR 116