Jatropha Genome Database

JcCB0030781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030781.10 - phase: 0 /partial
         (268 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ; chr04_ps...   408   e-114
IMGA|Medtr3g150290.1 Glycoside hydrolase, catalytic core chr03_p...   134   5e-32

>IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ;
           chr04_pseudomolecule_IMGAG_V3 40981878-40992441 E
           EGN_Mt090430 20090702
          Length = 788

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 190/262 (72%), Positives = 212/262 (80%)

Query: 7   EGGRKPWNSINFVCAHDGFTLADLVTYXXXXXXXXXXXXXXXXXXXXXXXCGLEGEFASI 66
           +GGRKPWNSIN VCAHDGFTLADLVTY                       CG EGEF S 
Sbjct: 527 QGGRKPWNSINLVCAHDGFTLADLVTYNNKHNLPNGEDNNDGENHNSSWNCGEEGEFVSA 586

Query: 67  SVKKLRKRQMRNFFVCLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNYINYFRWDKKEES 126
           SVKK+RKRQMRNFF+ LMVSQGVPMI+MGDEYGHTKGGNNNTYCHDNY+NYFRWDKKEES
Sbjct: 587 SVKKMRKRQMRNFFLSLMVSQGVPMIFMGDEYGHTKGGNNNTYCHDNYLNYFRWDKKEES 646

Query: 127 SSDFYRFCCLMTKFRSECESLGLNDFPTAERLQWHGHVPRMPDWSETSRFVAFTVTDTVK 186
           SSDF+RFC L+TKFR ECESLGL+DFPT+ERLQWHGH P  PDWSE+SRFVAFT+ D VK
Sbjct: 647 SSDFFRFCRLLTKFRQECESLGLDDFPTSERLQWHGHFPVTPDWSESSRFVAFTLMDLVK 706

Query: 187 GEIYVAFNAKHLPVTVALPERLGYRWEPLVDTGKASPFDFLSGDVPEREIAIKQYSHFLD 246
           GE+YVAFN  HLP T+ LPER GYRWEPLVDT K +P+DFL+ D+P R+IAI+QY+ FLD
Sbjct: 707 GEVYVAFNTSHLPFTITLPERPGYRWEPLVDTSKKAPYDFLTPDLPGRDIAIQQYAQFLD 766

Query: 247 ANLYPMHSYSSIILTLSPDDNV 268
           AN+YPM SYSSIIL  +PD N 
Sbjct: 767 ANMYPMLSYSSIILLRTPDVNA 788


>IMGA|Medtr3g150290.1 Glycoside hydrolase, catalytic core
           chr03_pseudomolecule_IMGAG_V3 39561825-39558471 E
           EGN_Mt090430 20090702
          Length = 213

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 98/168 (58%), Gaps = 7/168 (4%)

Query: 67  SVKKLRKRQMRNFFVCLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNYINYFRWDKKEES 126
           S++ LR RQM+NF + LM+SQG PM+ MGDEYGHT+ GNNN+Y HD+ IN+F WD+ +  
Sbjct: 31  SIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDSAINFFLWDQLDAR 90

Query: 127 SSDFYRFCCLMTKFRSECESLGLNDFPTAERLQWHGHVPRMPDWSE-TSRFVAFTVTDTV 185
             D +RF     K+R   ++L   +F +   + WH       +W    S+F+AFT+ D  
Sbjct: 91  KGDHFRFFSNAIKYRHAHKTLSHENFLSENEITWHE-----DNWDNYESKFLAFTLHDKS 145

Query: 186 KGEIYVAFNAKHLPVTVALPERLGYR-WEPLVDTGKASPFDFLSGDVP 232
            G+IY+AFNA    +   LP     R W  +VDT   SP D +   VP
Sbjct: 146 GGDIYLAFNAHDYFLKALLPTPPTKRKWFRVVDTNLQSPDDIVLDGVP 193