Jatropha Genome Database

JcCB0030711.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.30 + phase: 0 /partial
         (265 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g101240.1 Bacterial trigger factor, C-terminal chr05_...   271   3e-73

>IMGA|Medtr5g101240.1 Bacterial trigger factor, C-terminal
           chr05_pseudomolecule_IMGAG_V3 40502851-40507905 E
           EGN_Mt090430 20090702
          Length = 561

 Score =  271 bits (692), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 126/180 (70%), Positives = 152/180 (84%)

Query: 86  DRLPADIRVTETVEPNSRLRLTVEVPEAVCDDCYSRVMNEFMKQARVPGFRPGKNVPESI 145
           DRLPA ++VTET E NSR+ L VEVP  VC+DCY RV+ EF K A+VPGFRPGK +PESI
Sbjct: 105 DRLPAQLKVTETKESNSRVTLHVEVPSLVCEDCYERVLVEFTKFAKVPGFRPGKKIPESI 164

Query: 146 LLSYVGKENVQKATIESVLKRTLPHAMSSVTGRALRDSIRIVTKFSDMEKAYSSLNTLRY 205
           L+ YVG +NVQKATIES+L+RTL HA+++VTGRAL+DSIRIVTKFSDME  YSSL  LRY
Sbjct: 165 LVGYVGSKNVQKATIESILRRTLSHAVTAVTGRALQDSIRIVTKFSDMEDTYSSLGYLRY 224

Query: 206 DIIVDVAPEVKWIPENAYKILKIVVEIDSDVDAQTASEKELRRRQKSLGAMRIVTDRGLQ 265
           D+ VDVAPE+KWI ++AYK LK+VVEID+++DA  ASEKE RRR KS G +++VTDRGLQ
Sbjct: 225 DVSVDVAPEIKWISDDAYKNLKVVVEIDNEIDAHIASEKEFRRRYKSAGVLKVVTDRGLQ 284