Jatropha Genome Database

JcCB0030711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.20 - phase: 0 
         (187 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g029560.1 hypothetical protein chr02_pseudomolecule_I...   104   3e-23

>IMGA|Medtr2g029560.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 7896995-7890942 F
           EGN_Mt090430 20090702
          Length = 208

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 101/206 (49%), Gaps = 37/206 (17%)

Query: 1   MEGVGSRLGRASSRYGPSATATVFNGPVRKWKKKWXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEGVG+RLGR+S+RYGP   ATVF GPVRKWKKKW                         
Sbjct: 1   MEGVGARLGRSSTRYGP---ATVFTGPVRKWKKKWVHVLPSSSSSNSNNNNANQNHANGS 57

Query: 61  XXTTNSRLLLCRWTPLSPADATS----------------EEPPKRKFRYTPIVVLEEEQR 104
                S LLL +WTP++ +   +                EEPP+RKF+Y P+ VLEE++ 
Sbjct: 58  NGNNGSHLLLFKWTPITQSQNNANGNGNGSVKDAAVEPVEEPPRRKFKYVPVAVLEEQKN 117

Query: 105 KA-----AKQVDHEAKTDGTNQFTALHPSKNDELN-----NDTAL-KTETQDSNV----- 148
           +A     A++V+ E+     +   A   SKN+ L+     ND  + ++E QD N      
Sbjct: 118 EATEDEVAEKVEDESNPIEADSSAAEPTSKNETLDEKPDINDVPMEESEPQDKNQVVRQD 177

Query: 149 --SNLDLDLCLKGHNGDPDSVGRTKE 172
              +LDL L L  H+ D DS  +T +
Sbjct: 178 LNESLDLSLGLTSHDEDQDSDSKTNQ 203