Jatropha Genome Database

JcCB0030711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.10 + phase: 0 
         (343 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g101180.1 GrpE protein, head chr05_pseudomolecule_IMG...   294   5e-80
IMGA|Medtr7g104090.1 GrpE protein, head chr07_pseudomolecule_IMG...    59   5e-09

>IMGA|Medtr5g101180.1 GrpE protein, head
           chr05_pseudomolecule_IMGAG_V3 40480668-40483879 E
           EGN_Mt090430 20090702
          Length = 318

 Score =  294 bits (752), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 203/297 (68%), Gaps = 15/297 (5%)

Query: 46  HSKQFVPGQVSLFHHSALSSSPFQRFGFTSSASPETNEKEEGSTAENNGASRNADAKPSN 105
           +S    P QV+    S  SS+   +FGF+SSAS ET E +EG+   N   +    AK S 
Sbjct: 22  NSTHLFPVQVNFLCPSINSST--SKFGFSSSASVET-EGKEGNNVHNGNFTSADPAKTSE 78

Query: 106 KTED-------SASEESEKSGCNSESQPTMSQSVKRRRSGTKRTAFXXXXXXXXXXXXXX 158
           + E+        +++++E+SG  S S  + SQ+VKRRR   KRTAF              
Sbjct: 79  EAEEIDQPGQAKSADQTEESG--SISADSHSQTVKRRRRSIKRTAFSDSDSDSESDLSRD 136

Query: 159 X--XXXXXXXXXXXXXXXXXXXMQDKVLRTYAEMENVMERTKREAENSKKFAVQNFAKSL 216
                                 MQDKVLRTYAEMENVM+RT+REAENS+KFA+QNFAKSL
Sbjct: 137 DLIKLVAEKEELLKLKKKEIEKMQDKVLRTYAEMENVMDRTRREAENSRKFAIQNFAKSL 196

Query: 217 LDVADNLGRASAVVKDSFSKIDASTDATG-AVPLLKTLLEGVEMTEKQLADVFKKFGVEK 275
           LDVADNLGRAS+VVK+SFSKID S+D++  AV LLKTLLEGVEMTEKQL++  KKFGVEK
Sbjct: 197 LDVADNLGRASSVVKESFSKIDTSSDSSAEAVKLLKTLLEGVEMTEKQLSEALKKFGVEK 256

Query: 276 FDPINEPFDPHKHYAVFQLPDASKPPGTVAAVLKAGYVLYDRVIRPAEVGVTIAVDN 332
           FDP NEPFDPH+H AVF++PD SKPPGTVAAVLKAGY+L+DRVIRPAEVGVT A +N
Sbjct: 257 FDPTNEPFDPHRHNAVFKVPDGSKPPGTVAAVLKAGYLLHDRVIRPAEVGVTQAKEN 313


>IMGA|Medtr7g104090.1 GrpE protein, head
           chr07_pseudomolecule_IMGAG_V3 23513317-23517957 E
           EGN_Mt090430 20090702
          Length = 335

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 19/151 (12%)

Query: 180 QDKVLRTYAEMENVMERTKREAENSKKFAVQNFAKSLLDVADNLGRASAVVK---DSFSK 236
           +D+ LR  A+ +N  +RT R+  +    A     +SLL V DN  RA A +K   +   K
Sbjct: 163 KDRKLRIGADFDNYRKRTDRDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEK 222

Query: 237 IDASTDATGAVPLLKTLLEGVEMTEKQLADVFKKFGVEKFDPINEPFDPHKHYAVFQLPD 296
           I+ S                 +   KQ  ++    GVE  D +  PFDP  H A+ +   
Sbjct: 223 INNS----------------YQSIYKQFIEILNSLGVEPVDTVGNPFDPMLHEAIMREDS 266

Query: 297 ASKPPGTVAAVLKAGYVLYDRVIRPAEVGVT 327
                G +    + G+ L DR++RP+ V V+
Sbjct: 267 DEFEDGIILQEFRKGFKLGDRLLRPSMVKVS 297