Jatropha Genome Database

JcCB0028581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028581.10 + phase: 2 /pseudo/partial
         (323 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC151525_29.1 hypothetical protein AC151525.18 152102-14875...   167   9e-42

>IMGA|AC151525_29.1 hypothetical protein AC151525.18 152102-148754 E
           EGN_Mt090430 20090702
          Length = 723

 Score =  167 bits (422), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 105/231 (45%), Positives = 140/231 (60%), Gaps = 18/231 (7%)

Query: 107 LFSLILPREDKVRLAKAEEKLIEDVRMLQQDVSSLRASLQ------------------RI 148
           + S++   EDK+RL   EEKL  +V++ QQ+VS+ R SLQ                  RI
Sbjct: 493 MSSILKSGEDKLRLTNNEEKLSGEVKLFQQEVSAARGSLQELSSRKSSIQQDIASFKQRI 552

Query: 149 FFIDKRVPELESEKKVAASTRNFKEAARIAAEAKSLYVEKDGVQIDLERTTAELEKLEED 208
            FIDKRVPELE+EKKVA + RNFKEAARIA+EAKSL VEK+ +Q+ ++  T+ L+KLEE+
Sbjct: 553 IFIDKRVPELEAEKKVATAARNFKEAARIASEAKSLCVEKENIQMGMDTATSNLQKLEEE 612

Query: 209 MKNTVSRLLDTEHLISSKEKEVAMARFQRLLLIAGAATAERVSALELGDSXXXXXXXXXX 268
           +K T+ +L +TE +I  KEKE+AMAR+Q+LLL A  A AE+ +A E+GD           
Sbjct: 613 IKGTLDKLQETEGMILLKEKELAMARYQKLLLTAATARAEKAAAQEMGDVEEANLLLAEA 672

Query: 269 XXXXXXXXXXQPIYNFNKEQFPNLPKHFISMELVFNLGRKQLADLAASVGI 319
                     +  YNF  E   NL K  ISM+LV  L +KQL  L  +  I
Sbjct: 673 EAADCEAERIRSTYNFKAEDISNLRKDLISMDLVSILDKKQLEKLVVTSSI 723