Jatropha Genome Database

JcCB0028471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028471.20 + phase: 0 /partial
         (54 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3 exonuc...    83   3e-17
IMGA|Medtr7g140440.3 Zinc finger, CCHC-type; Putative 5-3 exonuc...    79   4e-16
IMGA|Medtr7g140440.2 Zinc finger, CCHC-type; Putative 5-3 exonuc...    79   5e-16
IMGA|Medtr1g096560.1 Putative 5-3 exonuclease chr01_pseudomolecu...    71   2e-13

>IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3
          exonuclease chr07_pseudomolecule_IMGAG_V3
          33823109-33833019 E EGN_Mt090430 20090702
          Length = 956

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/52 (75%), Positives = 42/52 (80%), Gaps = 1/52 (1%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKED-ANGVSIPIDVSRPNPNGVEFDN 51
          MGVPAFYRWLADRYP +IVDVVEE P    A G   P+DVSRPNPNG+EFDN
Sbjct: 1  MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDN 52


>IMGA|Medtr7g140440.3 Zinc finger, CCHC-type; Putative 5-3
          exonuclease chr07_pseudomolecule_IMGAG_V3
          33823109-33828323 E EGN_Mt090430 20090702
          Length = 442

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 42/52 (80%), Gaps = 1/52 (1%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKED-ANGVSIPIDVSRPNPNGVEFDN 51
          MGVPAFYRWLADRYP +IVDVVEE P    A G   P+DVSRPNPNG+EFDN
Sbjct: 1  MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDN 52


>IMGA|Medtr7g140440.2 Zinc finger, CCHC-type; Putative 5-3
          exonuclease chr07_pseudomolecule_IMGAG_V3
          33823109-33830234 E EGN_Mt090430 20090702
          Length = 629

 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 42/52 (80%), Gaps = 1/52 (1%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKED-ANGVSIPIDVSRPNPNGVEFDN 51
          MGVPAFYRWLADRYP +IVDVVEE P    A G   P+DVSRPNPNG+EFDN
Sbjct: 1  MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDN 52


>IMGA|Medtr1g096560.1 Putative 5-3 exonuclease
          chr01_pseudomolecule_IMGAG_V3 19777863-19777303 H
          EGN_Mt090430 20090702
          Length = 107

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 40/52 (76%), Gaps = 6/52 (11%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDNC 52
          MGVPAFYRWLADRYPL+I DVVE++       V  PID S+PNPNG+EFDN 
Sbjct: 1  MGVPAFYRWLADRYPLSISDVVEDD------DVPSPIDASKPNPNGIEFDNL 46