Jatropha Genome Database

JcCB0028271.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028271.30 + phase: 0 /partial
         (672 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g106770.1 EPS15 homology (EH) chr05_pseudomolecule_IM...   408   e-114
IMGA|Medtr1g023400.1 Calcium-binding EF-hand chr01_pseudomolecul...   224   8e-59
IMGA|Medtr2g029240.1 EPS15 homology (EH); Dynamin; Actin-binding...    84   2e-16
IMGA|Medtr8g147510.1 EPS15 homology (EH); Dynamin chr08_pseudomo...    80   3e-15
IMGA|Medtr5g101130.1 EPS15 homology (EH); Dynamin chr05_pseudomo...    78   1e-14

>IMGA|Medtr5g106770.1 EPS15 homology (EH)
           chr05_pseudomolecule_IMGAG_V3 43009628-43020393 E
           EGN_Mt090430 20090702
          Length = 1001

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 288/689 (41%), Positives = 374/689 (54%), Gaps = 108/689 (15%)

Query: 7   GPNMDQFEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYADQSRIGFLGRAE 66
            PN+D F+AYFRRADLD DGRISG EAV+FFQGS LPK+VLAQIW +A+ ++ GFLGRAE
Sbjct: 8   APNVDLFDAYFRRADLDRDGRISGVEAVSFFQGSGLPKKVLAQIWEFANTNQSGFLGRAE 67

Query: 67  FYNALRLVTVAQTKRELTPDIVKAALYGXXXXXXXXXXXNLPATPVLHVPQVNPVVAASA 126
           FYNAL+LVTVAQ+KRELTP++VKAALYG             PA   +  PQ+N   AA  
Sbjct: 68  FYNALKLVTVAQSKRELTPEMVKAALYG-------------PAASKIPAPQIN--FAA-- 110

Query: 127 PQMGTVAPTASQNPGFRGPGVPNPGMNQHYFXXXXXXXXXXXXXXXXGASSHPPQGFISP 186
               TV P ++ N G RGP +PN    Q++                  A+S P     +P
Sbjct: 111 ----TVTPPSAPNLGPRGP-LPN----QNF-----------------PAASQP-----TP 139

Query: 187 EFSRGGGMVGNSQAMPTGTAPRPSQAMPTSTAPRPSQLMPSSAP-------GTSIPTSNI 239
                  M   +Q +P  + PRP+    TS+A      M SS P        + +P    
Sbjct: 140 LVRPLQNMSAGTQGLPAVSGPRPA----TSSAFPGYGNMGSSGPLQQPQVTSSQLPVRGT 195

Query: 240 STSWLGGKTSAAMTGPPSTPSATMQPRAQVSMPSQPTANDSKALVASGNGFSTHSSFGSD 299
           S   +   T++A +  P TP+    P +  S PS  + N    ++AS       S FG D
Sbjct: 196 SPVAI---TTSASSVAPLTPTQPQHPLS-ASKPSDTSVN---GIMAS------DSFFGGD 242

Query: 300 GFSAISSTRKQDLSIPTYSTTGPSALATAVPASTGVHPPVKSNSLDSLQNAFATQPLGGQ 359
            FS  SS   Q+ S   +S+         VP S G    +++ + DSLQ + AT  +   
Sbjct: 243 LFSTTSSQPNQNSSSQGFSSA-------IVPVSGGNQSSIRTTTPDSLQTSLATHSV--- 292

Query: 360 LQRAQSLXXXXXXXXXXXXXXXXXXXXXXXIG---NLSDNSQLQ----WPKMKALDIQKY 412
             R   L                        G    L D++  Q    WP+M   D+QKY
Sbjct: 293 --RPHLLQLNQPAVNQNQHASVQAPNIPTSSGLPVRLQDSASGQPQPPWPRMTQTDVQKY 350

Query: 413 TKVFMEVDTDRDGRITGEQARNLFLSWGLPREVLKQVWXXXXXXXXXXXXXREFCFALYL 472
           T+VFMEVD DRDG+ITGEQARNLFLSW LPREVL QVW             REF  ALYL
Sbjct: 351 TRVFMEVDRDRDGKITGEQARNLFLSWQLPREVLMQVWDLSDQDNDSMLSLREFWIALYL 410

Query: 473 MEQYMAGRSLPSSLPSNVMLDETLLSMTGQPKVAYGNAAWGPRPGFGMQPGMVTQPIAPA 532
           ME++  GR+LPS LP+N++ D  + + TGQP   +    WG + G   Q GM        
Sbjct: 411 MERHREGRALPSVLPNNILPD--IPTTTGQPANLHTPVTWGNQSGVQQQQGMT------G 462

Query: 533 TGLRPPVPVTAPQAKPDGVMISN------QQKPRAPVLEDSFRNQSDEGVQNSLP---QD 583
           +G R   P      +P  V  S+      QQK + PVLE    NQ     QNS+    Q+
Sbjct: 463 SGARQLNPTAGRPPRPAAVPPSDEGTQNKQQKSKIPVLEKHLINQLSSDEQNSINLKFQE 522

Query: 584 GTVSEKKVDEPEKVILDSKEKIEFYRTKMQDLVLYKSRCENKLNEITERALADKREAEML 643
            T ++KKV+E EK I +S+EKI+F+R+KMQ+LV+YKSRC+N+LNEI ER  ADK E + L
Sbjct: 523 ATEADKKVEELEKEIAESREKIDFFRSKMQELVIYKSRCDNRLNEIMERISADKHEVDNL 582

Query: 644 GKKYEEKYKQVAEVASKLTIEEATYREIQ 672
            KKYE+KYKQV +V+SKLT EEAT+R+IQ
Sbjct: 583 AKKYEDKYKQVGDVSSKLTTEEATFRDIQ 611



 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 2   AGQPQGP-------NMDQFEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYA 54
           +GQPQ P       ++ ++   F   D D DG+I+G +A   F    LP++VL Q+W  +
Sbjct: 332 SGQPQPPWPRMTQTDVQKYTRVFMEVDRDRDGKITGEQARNLFLSWQLPREVLMQVWDLS 391

Query: 55  DQSRIGFLGRAEFYNALRLVTVAQTKREL 83
           DQ     L   EF+ AL L+   +  R L
Sbjct: 392 DQDNDSMLSLREFWIALYLMERHREGRAL 420


>IMGA|Medtr1g023400.1 Calcium-binding EF-hand
           chr01_pseudomolecule_IMGAG_V3 5183293-5174794 E
           EGN_Mt090430 20090702
          Length = 808

 Score =  224 bits (572), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 219/451 (48%), Gaps = 77/451 (17%)

Query: 231 GTSIPTSNISTSW-LGGKTSAAMTGPPSTPSATMQPRAQVSMPSQPTANDSKALVASGNG 289
           G ++PT++    +     +SA++  PP+ P+ +  P          + ND   +VAS + 
Sbjct: 141 GGTLPTASTQEGFGFAITSSASIVAPPTWPTQSKYPT---------SVND--GIVASDSF 189

Query: 290 FSTHSSFGSDGFSAISSTRKQDLSIPTYSTTGPSALATAVPASTGVHPPVKSNSLDSLQN 349
           F      G D FS  SS   QD S        P   ++A+     +H    + + DSLQ+
Sbjct: 190 FR-----GGDLFSTTSSQPNQDSS--------PHGFSSAI-----LHVSCWNTTSDSLQS 231

Query: 350 AFATQPLGGQLQRAQSLXXXXXXXXXXXXXXXXXXXXXXXIGNLSDNSQLQ----WPKMK 405
           + AT  +   LQ+ Q                            L D++  Q    WP+M 
Sbjct: 232 SLATHSVRPYLQQNQHASVQAPNMHSSPGLPV----------RLQDSASGQPQPPWPRMT 281

Query: 406 ALDIQKYTKVFMEVDTDRDGRITGEQARNLFLSWGLPREVLKQVWXXXXXXXXXXXXXRE 465
             D QKYT +FMEVD DRDG+ITGEQAR+LFLSW LP++VLKQV               E
Sbjct: 282 QTDKQKYTNIFMEVDKDRDGKITGEQARDLFLSWALPKDVLKQVCDLSDQDNDSMLSLNE 341

Query: 466 FCFALYLMEQYMAGRSLPSSLPSNVMLDETLLSMTGQPKVAYGNAAWGPRPGFGMQPGMV 525
           FC AL+LME++  G +LP+ LP+N++LD   L  +GQP        WG + G   Q  M 
Sbjct: 342 FCIALHLMERHREGHALPAVLPNNILLD---LPTSGQPANLLSPVTWGNQSGVQQQQMMT 398

Query: 526 ---TQPIAPATGLRPPVPVTAPQAKPDGVMISNQQKPRAPVLEDSFRNQSDEGVQNSLPQ 582
               Q + P  G  PP P   P +  D    S QQK + PVLE    NQ     QNS+  
Sbjct: 399 GSGAQHLNPTAGW-PPRPAAVPPS--DEGPQSKQQKSKIPVLEKHLTNQLSSDEQNSI-- 453

Query: 583 DGTVSEKKVDEPEKVILDSKEKIEFYR-TKMQDLVLYKSRCENKLNEITERALADKREAE 641
                                 ++F   T+   +V Y SRC+N+LNE TER  ADK E E
Sbjct: 454 ---------------------NLKFQEATEANKMVKYNSRCDNRLNETTERISADKHEVE 492

Query: 642 MLGKKYEEKYKQVAEVASKLTIEEATYREIQ 672
           +L KKYE+KYKQV +V+SKLT EEAT+ +IQ
Sbjct: 493 ILAKKYEDKYKQVGDVSSKLTTEEATFCDIQ 523



 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 51/60 (85%)

Query: 7  GPNMDQFEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYADQSRIGFLGRAE 66
           PN+  F+A+FRRADLD DGRISG EAV+FFQGS LP+++LAQIW +A+ ++ GFLGRA+
Sbjct: 9  APNVVLFDAFFRRADLDCDGRISGVEAVSFFQGSGLPQKILAQIWKFANTNQSGFLGRAD 68


>IMGA|Medtr2g029240.1 EPS15 homology (EH); Dynamin; Actin-binding,
          actinin-type chr02_pseudomolecule_IMGAG_V3
          7748883-7753752 E EGN_Mt090430 20090702
          Length = 540

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%)

Query: 13 FEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYADQSRIGFLGRAEFYNALR 72
          ++ +F  AD DGDGRISG EA  FF  SNL +  L Q+W  AD  R GFLG +EF  A++
Sbjct: 14 YQQWFNLADSDGDGRISGNEATKFFALSNLSRSQLKQLWALADNKRQGFLGFSEFVTAMQ 73

Query: 73 LVTVAQTKRELTPDIVKAAL 92
          LV++AQ   EL  DI+K  +
Sbjct: 74 LVSLAQAGYELNSDILKIQM 93


>IMGA|Medtr8g147510.1 EPS15 homology (EH); Dynamin
          chr08_pseudomolecule_IMGAG_V3 36336789-36341831 E
          EGN_Mt090430 20090702
          Length = 542

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 54/84 (64%)

Query: 9  NMDQFEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYADQSRIGFLGRAEFY 68
          +++ ++ +F  AD DGDGRISG +A+ FF  SNL +  L Q+W  AD  R GFLG  EF 
Sbjct: 15 HIETYQQWFILADSDGDGRISGNDAIKFFALSNLSRPQLKQVWAIADTKRQGFLGFEEFV 74

Query: 69 NALRLVTVAQTKRELTPDIVKAAL 92
           A++L++V Q   +L  DI+K  +
Sbjct: 75 TAMQLISVGQAGYDLNSDILKTQI 98


>IMGA|Medtr5g101130.1 EPS15 homology (EH); Dynamin
          chr05_pseudomolecule_IMGAG_V3 40458795-40464475 E
          EGN_Mt090430 20090702
          Length = 557

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%)

Query: 13 FEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYADQSRIGFLGRAEFYNALR 72
          ++ +F  AD DGDGRI+G +A  FF  SNL +Q L Q+W  AD  R G+LG  EF  A++
Sbjct: 19 YQQWFNHADSDGDGRITGNDATKFFAMSNLSRQHLKQVWAIADSKRQGYLGFQEFIIAMQ 78

Query: 73 LVTVAQTKRELTPDIVKA 90
          LV++AQ+   +T D++ +
Sbjct: 79 LVSLAQSGHPITHDLLNS 96