Jatropha Genome Database

JcCB0028271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028271.10 - phase: 0 /pseudo/partial
         (177 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC234703_2.1 Xeroderma pigmentosum group D protein; ATP-dep...    74   4e-14
IMGA|Medtr2g123170.1 ATP-dependent helicase, DEAH-box; DEXDc2; ;...    74   4e-14
IMGA|Medtr4g009170.1 Xeroderma pigmentosum group D protein; ; ch...    52   1e-07

>IMGA|AC234703_2.1 Xeroderma pigmentosum group D protein;
          ATP-dependent helicase, DEAH-box; ; AC234703.1
          26378-15197 E EGN_Mt090430 20090702
          Length = 1036

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 5/64 (7%)

Query: 20 YHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLA 79
          Y I GI V+FPY+ Y +QL +M +V+ +L     +   +ALLESPTGTGK+L LLC+TLA
Sbjct: 4  YKIRGIDVDFPYEAYDSQLVYMDKVMQSL-----QEESNALLESPTGTGKTLCLLCATLA 58

Query: 80 WQQN 83
          W+++
Sbjct: 59 WRKS 62


>IMGA|Medtr2g123170.1 ATP-dependent helicase, DEAH-box; DEXDc2; ;
          chr02_pseudomolecule_IMGAG_V3 29769359-29758178 E
          EGN_Mt090430 20090702
          Length = 1036

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 5/64 (7%)

Query: 20 YHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLA 79
          Y I GI V+FPY+ Y +QL +M +V+ +L     +   +ALLESPTGTGK+L LLC+TLA
Sbjct: 4  YKIRGIDVDFPYEAYDSQLVYMDKVMQSL-----QEESNALLESPTGTGKTLCLLCATLA 58

Query: 80 WQQN 83
          W+++
Sbjct: 59 WRKS 62


>IMGA|Medtr4g009170.1 Xeroderma pigmentosum group D protein; ;
          chr04_pseudomolecule_IMGAG_V3 1397460-1392240 H
          EGN_Mt090430 20090702
          Length = 907

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 5/52 (9%)

Query: 29 FPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLAW 80
          FP++PY  Q+ FM  +  +L+         ++LESPTGTGK++S++CS L W
Sbjct: 17 FPFKPYSIQIDFMNALYQSLNHGGI-----SMLESPTGTGKTMSVICSALQW 63