Jatropha Genome Database

JcCB0028241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028241.10 + phase: 0 
         (250 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g069000.1 Allene oxide cyclase chr05_pseudomolecule_I...   290   5e-79
IMGA|Medtr8g074000.1 Allene oxide cyclase chr08_pseudomolecule_I...    95   3e-20

>IMGA|Medtr5g069000.1 Allene oxide cyclase
           chr05_pseudomolecule_IMGAG_V3 24864149-24862910 E
           EGN_Mt090430 20090702
          Length = 252

 Score =  290 bits (742), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 142/222 (63%), Positives = 170/222 (76%), Gaps = 11/222 (4%)

Query: 39  SLSFSSKTSIFNNRINNTFSVPKRS----------FSCKSQASDDSTPSKFQELHVYEIN 88
           SLSF S+ + FN       S  KRS          F+ + Q  + S P+K QEL VYEIN
Sbjct: 32  SLSFPSRRN-FNTSTTKQVSTTKRSSQNTRTNALFFNNQKQHQESSKPAKVQELFVYEIN 90

Query: 89  ERDRGSPAYLRLSQKEVNSLGDLVPFSNKLYTGDLQKRIGITAGICILIEHKAEKKGDRY 148
           ERDRGSPAYLRLSQK VNSLGDLVPFSNKLY+G+L+KR+GIT+G+CILI+++ EKKGDRY
Sbjct: 91  ERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYSGNLEKRLGITSGLCILIQNEPEKKGDRY 150

Query: 149 EAIYSFYFGDYGHIAVQGAYLTYEDSYLAVTGGTGIFEGVSGQVKLRQLIFPFKLFYTFY 208
           EAIYSFYFGDYGHI+VQG YLTY+D+YLA+TGG+GIFEGV GQVKL+QL+FPFKLFYTFY
Sbjct: 151 EAIYSFYFGDYGHISVQGPYLTYQDTYLAITGGSGIFEGVYGQVKLQQLVFPFKLFYTFY 210

Query: 209 LKGIKDLPEELVGKXXXXXXXXXXXXXXKACQPHAALVNFTD 250
           LKG+ DLP +L+GK              KA +PHA+L NFT+
Sbjct: 211 LKGVADLPADLLGKPVDPSPHVEPSTAAKATEPHASLPNFTN 252


>IMGA|Medtr8g074000.1 Allene oxide cyclase
           chr08_pseudomolecule_IMGAG_V3 14619374-14620421 E
           EGN_Mt090430 20090702
          Length = 150

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 70/119 (58%), Gaps = 16/119 (13%)

Query: 24  TITKSLRLPSMPANPSLSFSSKTSIF--NNRINNTFS------VPKRSFSCKSQASDDST 75
           TI  S   P+  A    SF + +S F  N R+N  FS      +P +SF+CKSQA++ + 
Sbjct: 10  TIPSSFVKPTAFATTPKSFLTPSSAFTKNLRMNTAFSQSCFSSLPMKSFTCKSQANEHAD 69

Query: 76  PSKFQELHVYEINERDRGSPAYLRLSQKEVNSLGDLVPFSNKLYTGDLQKRIGITAGIC 134
             K QE+HVYE NE DRGSPAY RLS K VNSLGDLV FSNK  T        I+ G C
Sbjct: 70  TEKVQEMHVYEFNESDRGSPAYSRLSNKSVNSLGDLVSFSNKFNT--------ISVGFC 120