Jatropha Genome Database

JcCB0027191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027191.10 - phase: 0 
         (258 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g069000.1 Allene oxide cyclase chr05_pseudomolecule_I...   267   3e-72
IMGA|Medtr8g074000.1 Allene oxide cyclase chr08_pseudomolecule_I...    54   1e-07

>IMGA|Medtr5g069000.1 Allene oxide cyclase
           chr05_pseudomolecule_IMGAG_V3 24864149-24862910 E
           EGN_Mt090430 20090702
          Length = 252

 Score =  267 bits (683), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 149/261 (57%), Positives = 176/261 (67%), Gaps = 14/261 (5%)

Query: 1   MAFTSSLTAISSFKLTNPTSHFLPSDRSLKQQGLFHQQNQSLS---TQNFKFSIPQHFST 57
           MA  SSL  ISS  L         S   L+ Q        SLS    +NF  S  +  ST
Sbjct: 1   MASMSSLKMISSLNL---------STSPLQTQNQIVSSGLSLSFPSRRNFNTSTTKQVST 51

Query: 58  RRCSPKSIVTTA-FFSKLCSESPKRKPAGKVQQLNVYEINERDRDSPAILKLSKKPELAL 116
            + S ++  T A FF+         KPA KVQ+L VYEINERDR SPA L+LS+K   +L
Sbjct: 52  TKRSSQNTRTNALFFNNQKQHQESSKPA-KVQELFVYEINERDRGSPAYLRLSQKSVNSL 110

Query: 117 GDLVPFTNKLYSGDLQKRFGITAGLCVLIQHVPEKNGDRYEANYSFYFGDYGHISVQGAY 176
           GDLVPF+NKLYSG+L+KR GIT+GLC+LIQ+ PEK GDRYEA YSFYFGDYGHISVQG Y
Sbjct: 111 GDLVPFSNKLYSGNLEKRLGITSGLCILIQNEPEKKGDRYEAIYSFYFGDYGHISVQGPY 170

Query: 177 LTYQDTFLAVTGGSGIFEGVYGQVKLQQIVFPYKLFYTFYLKGIPDLPAELLGXXXXXXX 236
           LTYQDT+LA+TGGSGIFEGVYGQVKLQQ+VFP+KLFYTFYLKG+ DLPA+LLG       
Sbjct: 171 LTYQDTYLAITGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGVADLPADLLGKPVDPSP 230

Query: 237 XXXXXXXXXXXQPNATILNFT 257
                      +P+A++ NFT
Sbjct: 231 HVEPSTAAKATEPHASLPNFT 251


>IMGA|Medtr8g074000.1 Allene oxide cyclase
           chr08_pseudomolecule_IMGAG_V3 14619374-14620421 E
           EGN_Mt090430 20090702
          Length = 150

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 8/57 (14%)

Query: 86  KVQQLNVYEINERDRDSPAILKLSKKPELALGDLVPFTNKLYSGDLQKRFGITAGLC 142
           KVQ+++VYE NE DR SPA  +LS K   +LGDLV F+NK  +        I+ G C
Sbjct: 72  KVQEMHVYEFNESDRGSPAYSRLSNKSVNSLGDLVSFSNKFNT--------ISVGFC 120