Jatropha Genome Database

JcCB0027171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027171.10 + phase: 0 /partial
         (172 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g163420.1 Zinc finger, Mcm10/DnaG-type chr03_pseudomo...   156   6e-39

>IMGA|Medtr3g163420.1 Zinc finger, Mcm10/DnaG-type
           chr03_pseudomolecule_IMGAG_V3 42952387-42949248 E
           EGN_Mt090430 20090702
          Length = 412

 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 118/181 (65%), Gaps = 10/181 (5%)

Query: 1   SLCYFRRQGIYCRYHKSKASEVYSTTRTELRGGNLKTAF--RDTLKSQGIYLVDPLSDKT 58
           +L   +RQG YC+YHKSK+SE YST RTEL+GGNL+TAF  RD LKS+GIYLVDPL+DKT
Sbjct: 233 TLAINKRQGTYCKYHKSKSSEKYSTVRTELKGGNLRTAFRPRDYLKSEGIYLVDPLADKT 292

Query: 59  NINKPVQPLKLLSVEGLKKALSNADKVTTNTFSQGIRFLNEITGLILLTLVV-------D 111
           N+ K  +P+KLLSV+G++KALSNA KVTT + SQGIRFL+E+ G     ++        D
Sbjct: 293 NLKK-SKPVKLLSVDGIRKALSNAGKVTTASHSQGIRFLSEVAGKFDPKMMKKEPKTPND 351

Query: 112 TNSSSGAMKLSTMKVDPSILXXXXXXXXXXXTDQGQVSAEKAKHGKGKMIELDIYGSDEE 171
            +  +   K S++ +  S +             + QV  +KA    GKMIELD+  SDE+
Sbjct: 352 QSKCTTKRKSSSVNMGYSSVIRNQQLDVKKAKTERQVFVDKATKSTGKMIELDLISSDED 411

Query: 172 I 172
            
Sbjct: 412 F 412